RNA id: XM_043262341.1


Basic Information

Item Value
RNA id XM_043262341.1
length 2593
RNA type mRNA
GC content 0.44
exon number 18
gene id ssbp3a
representative True

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 7126271 ~ 7151771 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TCGCTGTGGCAGGGTCGGTTGAAGCGGATGGGGTCAGAGGCGGGCTACACGTTGACAGCTGGAACATAAGGAAGCATCGCAGTCAGGCGGGCAGACGCGTTTATGTTCAGCGCAAGTCATGTTCACGAAAGGTAAAGGGAACGCGGTGCCATCGGACGGGCAAGCTCGGGAAAAGTTGGCATTGTACGTCTATGAATATTTGTTACACGTGGGAGCTCAAAAATCTGCACAGACGTTTTTATCAGAGATAAGATGGGAGAAGAACATAACCCTTGGTGAACCACCAGGTTTTCTGCACTCTTGGTGGTGTGTGTTTTGGGACCTGTACTGCGCAGCACCTGAGAGAAGGGACACGTGTGATCACTCCAGTGAAGCAAAGGCCTTCCATGACTATAGTGCTGCTGCAGCACCCAGTCCAGTCCTAGGCAACATACCTCCCAGTGACAGCATTCCAGGTGGACCCATGCCCCCCGGATTCTTCCAGGGACCACCTGGTTCCCAACCCTCCCCTCACACTCAGCTACCTCCCAACTCTAACATGATGGGGGCGCATGGACAGCCTTTTATGTCTCCTCGCTATGCTGGAGGACCTCGGCCACCCATCAGAATGGGTAACCCGCCTCCAGGTGGGCAGCCTTTACCTCCAAATATGATGGACCCTACACGACCAACAGGCCATCCAAATCTGGCACCTCTGCAGAGAATGAATGCTCCTCGAGGAATGGGCCCGATGGGACCGGGACCACAGTCTGATCCTTGGTTATTACAGAGCTATGGAGGAGGAATGCGGCCTCCAAACTCCATGGGCCCTGGAATGCCAGGGGTGAACATGGGAGCAGGAGCAGGAAGACCGTGGCCTAATCCTAATAATGGAAACACGATACCATATTCCTCATCATCCCCAGGAACATATGTGGGTCCTCCTGGAGGAGCAGGAGGTGGTGGTTGTCCTCCAGGTACACCCATCATGCCAAGTCCAGCAGACTCCACTAACTCGGGTGAAAACCTCTACACATTGATAAACTCGGTACCACCGGGAGGAAACAGATCTAATTTTCCTATGGGTCCTGGGTCAGATGGCCCAATGGGAGGACTGGAACCACATCACATGAATGGCTCACTGGgTTCAGGTGACATAGATGGAATCTCAAAGAACTCTCCTAATAATCTAAGCAGCATGAGTAACCCACCAGGAACGCCACGAGATGACAGTGAACTAGGTGGAAGTTTCCTACACTCTTTCCAAAATGAAAACTACTCACCGACAATGACAATGAGCGTGTGAAAGAAAAGCTCCGGCACCACGATACCACATGTCTTAAAGAAAGAACAAGGACCAACTTCACCAAGAACCAAGAGTGAGTCTAATCTCGCTCATCCATGGGAATCAAATCCTACAGCTCTGGAAGAGATGGATGCATCTCATTTCAGCACAGATAAGAGGAAGGACCCGTCTGAGAAGAGAGctctaatatttttaaaccactctgatattttcatgtaaaatttGAAATTGAGAAATTGAGTAGGCATCTAtgctaaaattattatatttcagaacCACACTTTGGATGTAGTGCAGAATAGTATGTACTTCAGGGAAGATATGCAGCATTTGTTTAACATTCCATTTAGAGTATATTAGGATATAAtatctgatattttaaaaagcctcAGAATAAGTTTGTCACGCTATAAAGGCTTTCTCGAAAAATGCTTAATCCAGAGAAAGTTTGGGTTACAGTGGAACTGATATGCACCAGTGCAGATCATTCAGCTATCATGGCCTTCATACTTGGGAAATACAATGAACCGttagcaaaattaaaatgactactTCTGTTCCGTGACACATTTTCTAACAATGGATTTTACTGCTGAAGCCTTCAAATGAGCATAATGTGGGacattttttccagtgtttttggGTGAGAGTTTGGTCAAACACAGCATCATGCAACACTGAATCTTCTTTCACTGGCctagtttttgttttcctttgtgGTGTTGTATTACGTTTTGACCCGTTATTTCCCTTTAGTCAAGAGTTAGAAATGTGCTGCAAACACCCAAAATATAGCTATTTAACTAAATTTAGCCAATAAGCAATGCCCTATCGCGATTTTGATAaccgtttttttgtttctgcatattttttgagacgtgtaaatatttgtattaacaGCCAAAACAAACTGAACAACTTTCAGAGGCGCAGTGAATACTGAAGTGtctatataaaaagtaaaaattcttGGGATGGACACATGGTTCGCCACTGATACCGATTAGCTGTCCTTTCTATCCCCTGTTCACTGAACAAGCTTGAAAAAAGTTGAAacactttccaaaaaaattttgatttttgtaaaattatttttaaaatatagtacaCTGAAAAAggggtgaatttttttttttgctgagttTGTATAAGTTTCTCTTCCCTAGACTGTCTTAATATTTTGCCGCCTTACTTGACCTGTTACATCATGTTGTTTAGCCTTTACTGTATGTATTATGTTCCTTGGAATACACAGTGGAATGACTTGTgtaatttttatgattaaattattttttgtttatacaacTA

Function

GO:

id name namespace
GO:0048936 peripheral nervous system neuron axonogenesis biological_process
GO:0003697 single-stranded DNA binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU14819 lncRNA upstream 25610 7099628 ~ 7100661 (+) False lrrc53
TU14808 lncRNA upstream 75277 7050725 ~ 7050994 (+) True G9940
XR_006247410.1 lncRNA upstream 83183 7042831 ~ 7043088 (+) True LOC122325829
TU14802 lncRNA upstream 89773 7036121 ~ 7036498 (+) False LOC122324999
XR_006247246.1 lncRNA upstream 89811 7036056 ~ 7036460 (+) True LOC122324999
TU14902 lncRNA downstream 37884 7189655 ~ 7196400 (+) True G10012
TU14903 lncRNA downstream 45319 7197090 ~ 7199537 (+) True G10013
TU14910 lncRNA downstream 54736 7206507 ~ 7209934 (+) True G10020
TU14911 lncRNA downstream 58967 7210738 ~ 7210938 (+) True G10021
TU14967 lncRNA downstream 133907 7285678 ~ 7300079 (+) False gng12a
XM_043258755.1 mRNA upstream 14999 7106211 ~ 7111272 (+) True fam151a
XM_043258735.1 mRNA upstream 20479 7098303 ~ 7105792 (+) True lrrc53
XM_043258743.1 mRNA upstream 20479 7100182 ~ 7105792 (+) False lrrc53
XM_043258773.1 mRNA upstream 28095 7084134 ~ 7098176 (+) True cryz
XM_043255983.1 mRNA downstream 6163 7157934 ~ 7161192 (+) True cdcp2
XM_043221724.1 mRNA downstream 12934 7164705 ~ 7170115 (+) True cdc7
XM_043221740.1 mRNA downstream 12934 7164705 ~ 7170115 (+) False cdc7
XM_043221756.1 mRNA downstream 12934 7164705 ~ 7170115 (+) False cdc7
XM_043221732.1 mRNA downstream 12935 7164706 ~ 7170115 (+) False cdc7
TU14783 other upstream 139152 6986298 ~ 6987119 (+) True G9925
TU14736 other upstream 433896 6691668 ~ 6692375 (+) True G9889
TU14734 other upstream 435492 6690372 ~ 6690779 (+) True G9887
TU14569 other upstream 758317 6367177 ~ 6367954 (+) True sst2
unassigned_transcript_205 other upstream 903752 6222445 ~ 6222519 (+) True trnag-gcc_21
TU15034 other downstream 353820 7505591 ~ 7582385 (+) False G10108
TU15202 other downstream 955094 8106865 ~ 8107777 (+) True G10212
XR_006252402.1 other downstream 2010840 9162611 ~ 9171915 (+) False olfm3b
TU15832 other downstream 2594823 9746594 ~ 9751212 (+) True arpc5a
XR_006247735.1 other downstream 2759857 9911628 ~ 9916861 (+) True znf414

Expression Profile