RNA id: XM_043262654.1


Basic Information

Item Value
RNA id XM_043262654.1
length 708
RNA type mRNA
GC content 0.51
exon number 5
gene id LOC122361723
representative True

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 11137101 ~ 11138828 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGCATACAATAAAAgatggtgtttttgtgtgttacagACCAGGCTTTTGTCACCCTTGCCACAACTGACAATTATGCCAAAGGAGCAATGGTACTTGGCAAGTCGTTGAGGAACCACAACACATCGAGGAAACTAGTGGCCCTGATTGGCCCCCATGTCTCTGAACCCTCCAGAGCAGTGCTTCGCAAGGTCTATGACGAGGTCAGGCTGGTGGATGTGCTGGACAGTAGGGATGCTGCACACTTGGCCATGATGAAGAGACCTGACCTGGGCGTCACCTTCACCAAACTCCACTGCTGGACTCTTACAGAATActctaaatgtgtgtttatggaTGCAGATACTCTAGTTTTGTCTAACATAGATGAGTTATTTGATCGAGAGGAGCTCTCTGCCGCACCAGATCCCGGTTGGCCTGATTGCTTCAACTCTGGTGTGTTTGTCTTCCGTCCGTCCAACGAGACCTATGGGCAGCTTCTCACCGCTTGTTCAGAGAATGGCAGCTTTGATGGAGGAGACCAAGGAGTCCTGAACGGCTTCTTCGGCGACTGGGCAACAGCCGACATCAACAAACACCTCCCTTTCATCTACAACATGAGCAGCATAGCCATCTACACGTACCTCCCTGCGTTTAAACAATACGGTGCAAACGCGAAGGTGGTGCACTTCCTGGGCCAGATGAAGCCGTGGAGCTACACGTATAACCCC

Function

GO:

id name namespace
GO:0016757 transferase activity, transferring glycosyl groups molecular_function

KEGG:

id description
K00750 GYG1, GYG2; glycogenin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU16526 lncRNA upstream 4112 11131574 ~ 11132989 (+) False LOC122359491
TU16523 lncRNA upstream 13987 11119887 ~ 11123114 (+) False LOC122359491
TU16516 lncRNA upstream 158821 10953050 ~ 10978280 (+) True G11117
TU16501 lncRNA upstream 239604 10896683 ~ 10897497 (+) True G11106
TU16444 lncRNA upstream 305459 10758056 ~ 10831642 (+) True G11077
TU16535 lncRNA downstream 17710 11156538 ~ 11157341 (+) True G11133
TU16540 lncRNA downstream 66915 11205743 ~ 11206038 (+) True G11138
TU16539 lncRNA downstream 70173 11209001 ~ 11211575 (+) True G11137
TU16563 lncRNA downstream 164850 11303678 ~ 11338469 (+) False fitm1l
TU16575 lncRNA downstream 166089 11304917 ~ 11321347 (+) True G11162
XM_043259814.1 mRNA upstream 1110 11119854 ~ 11135991 (+) True LOC122359491
XM_043259653.1 mRNA upstream 219363 10908283 ~ 10917738 (+) True LOC122359360
XM_043259730.1 mRNA upstream 384291 10748820 ~ 10752810 (+) True si:dkey-24c2.9
XM_043259549.1 mRNA upstream 388760 10742485 ~ 10748341 (+) True gorasp1a
XM_043259452.1 mRNA upstream 395130 10733916 ~ 10741971 (+) True csrnp1a
XM_043256326.1 mRNA downstream 90932 11229760 ~ 11264234 (+) True kcnh2a
XM_043261468.1 mRNA downstream 126463 11265291 ~ 11300035 (+) False map4l
XM_043261476.1 mRNA downstream 126463 11265291 ~ 11300035 (+) False map4l
XM_043261450.1 mRNA downstream 126464 11265292 ~ 11300035 (+) True map4l
XM_043261459.1 mRNA downstream 126464 11265292 ~ 11300035 (+) False map4l
TU16308 other upstream 418907 10711130 ~ 10718194 (+) True G10979
XR_006247735.1 other upstream 1220240 9911628 ~ 9916861 (+) True znf414
XR_006247736.1 other upstream 1221610 9911628 ~ 9915491 (+) False znf414
TU15832 other upstream 1385889 9746594 ~ 9751212 (+) True arpc5a
XR_006252402.1 other upstream 1965186 9162611 ~ 9171915 (+) False olfm3b
TU16555 other downstream 101298 11240126 ~ 11256764 (+) False kcnh2a
TU16565 other downstream 201035 11339863 ~ 11341111 (+) False mrpl34
TU16613 other downstream 357532 11496360 ~ 11500078 (+) False mast3a
TU16615 other downstream 357532 11496360 ~ 11498937 (+) False mast3a
TU16617 other downstream 363574 11502402 ~ 11505730 (+) False mast3a

Expression Profile