RNA id: XM_043262822.1


Basic Information

Item Value
RNA id XM_043262822.1
length 6128
RNA type mRNA
GC content 0.48
exon number 35
gene id stag1a
representative True

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 11640359 ~ 11679922 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GAAAGTTTTTATTGTTTCGCACACATTACATGCTATATTTGATGTCTTAATTTTGTGTAGGCAAATAGCACAGAAATACCAGAAGaagcaaattacatttaatatatatatttttagatttacttgctttttatatgttttgcaCAGCATCTGATCTGGTCTGATGAGTTGTTTTCATTGTGATTCAGACCTTCCTGCTTAATTTCGAATGACTCATCAGCCCTGTAACAAAACGAGAGGCCAGTGCGGACCAGACAACAGCTCTAGGCCCTGTGAAGACCACCCACATACATTACTCTCCAATCCCCTGGTGCAATTACACAAAGGTCATTGCAGATTAGACAATTACTAAAGACTGAGAgctttaatatattgttttcacATAAAAAGAAAGCACGCATAAAACCCAGTCAACAAGATTCAATTAACAAAAGCAGAAAAGGGAGAAATAAAAAGGAAGTAAAAAATGATcattcttggaaaaaaaaaaatcaatggagCGTTCAGTATGCTAtgcaattaaaactaatttattccAGTTACACAGAACAACACATATTATAACACATAGTAcaataattcaattttattgtatattaaatattgtatataatatccATTTTATGCTTATATTTAACCCACATTCAAACACGATTCATAGAAATGATTGTGTTTACAGGAGTTCCTGAGACATCGATCACCAAAGGAATGAAATATACCGTTAAATCGTATATGCTGGCCGATTATGTGTTATCATTGTACAGTTTAAACGATTACAAGCCCGAGTCCTTCCGAAGAAGAAACGCGCCAAGATCGTGTTATTTTAGCGCCTAAACAGCGTACGAGCCCGTCGTGGCTGTGAGGGGTCTCTCCTCCTCCCCCCGCCACCGCCCGCCGGTCTTCGGCTGTTCTCGGCTGTGTCCGCCAGAGGGCGCCCGGGCTCCGGTGTCAACACGCGCCATTCGATTGTGGAAAATGCCACCAGATGGCGGTTTAGGATTGCTGCTCTTCTGAAAGGCGCGGTTCCTTCTCCCGGTCcaattttcaattaataaatccatatttagcaaaaaaaatatcGAATTCCGAATAGCGGGAACGCCGACCTTTGCGACCATGAGCATCCCAGGAAACAATTTCGTTATTCCAATAAAGcacttgagagagagagagagagagcgagcgaagGTCCGTCTCGACTGCATTAGCAGATTGATTCTGCTGAACATGAGGAGCAGATGAAGGCTCAGTGTTGCGGTGTTAATACTGTGATCAGCCCTTGAAGCGCGCAGAGCTGTAACCCGCCGTCATCATGATCACCTCAGAGCTGCCGGTGCTACAGGACTCGGGCTAGTCGGGTCAGGACACAGTGAGTCTCAGTATGAGTATGAGTGAGCTGGACGACCCTGGAGATGGAAAGAGCAAGAAGAAGAGAGGCCGGCCTGGCAGACCACCGGCAACTAACAAGAAACCTCGGAAGTCCCCTTTAGACAAGTGCCCTATGGGAGTCCAGCGGGGGAGGAAGGCCAATGGAATGACCCAGCAGAACGGAGAGGGTGAACCGGTCACTCTGTTTGAAGTGGTCAAACAGGGAAAGAGCGCTATGCAGTCGGTTGTTGATGACTGGATCGAGTCATACAAGCAAGACAGGGATTTAGCACTTCTGGACCTCATTAACTTCTTCATCCAGTGCTCTGGCTGTAAAGGCACCGTAAGAATCGAAATGTTTCGCAACATGCAGAATGCTGAAATTATCCGCAAAATGACAGAAGAGTTTGACGAGgaCAGTGGCGATTACCCCTTGACTATTTCTGGCCCGTTGTGGAAGAAGTTTCGCTACAACTTCTGTGAGTTCATCTGCGTCCTGATCCGCCAGTGCCAGTACAGCATCATCTACGACGAGTACATGATGGACACGGTCATCTCTCTGCTAACGGGTCTGTCAGACTCACAGGTTCGAGCCTTCAGGCACACCAGCACCCTAGCAGCTATGAAGCTTATGACAGCCCTGGTGAACGTAGCTCTGAATTTGAGCATTAACCAGgacaacacacagagacagtATGAAGCCGAACGCAACAAAATGGTGGGCAAGAGAGCCAATGAGAAGCTTGAGCTCCTACTTCAGAGAAGGAAAGAGCTTCAGGAAAACCAAGATGAAATCGAAAACATGATGAACTCGATCTTCAAGGGAATCTTTGTTCATCGTTATAGGGATGCGATTGCTGAAATCAGAGCAATTTGTATAGAAGAGATCGGTGTGTGGATGAAAATGTACAGCGATGCCTTCCTGAACGACAGCTACCTGAAGTACGTCGGCTGGACCTTACACGATCGGCAAGGCGAAGTGCGCTTGAAGTGTTTGAAAGCCTTGCAAAACCTCTACACGAACCGTGAACTGTTTCCAAAACTCGAACTCTTCACAAACCGTTTCAAGGATCGTATCGTGTCTATGACACTGGATAAAGAGTACGACGTGGCTGTGGAGGCCATCAGACTGGTCACTCTGATCCTCCAGGGTAGTGAGGACGCTTTATCTAATGAGGACTGTGAGAATGTCTATCATCTGGTGTACTCCGCTCACAGGCCTGTGGCAGTCGCTGCTGGGGAGTTTCTACATCGAAAGCTGTTTAGCAGACATGATCCTCAGGCCGAGGAAGCTCTGGCCAAACGCAGAGGCAGGAGCAGCCCAAACGGAAACCTCATTCGCATGCTGGTGCTCTTCTTTTTGGAGAGCGAGCTGCACGAACATGCTGCCTATCTAGTGGACAGTTTGTGGGAGAGCTCTCAGGAGCTGCTGAAAGACTGGGAGTGCATGACTGAGCTGCTGCTGGAGGAGCCGGTGCAGGGCGAGGAGGTGTTATCAGACAGGCAGGAGAGTGCTCTGATTGAGCTGACCGTCTGTACCATTCGTCAGGCTGCTGAAGCCCATCCGCCCGTGGGCAGAGGGACTGGGAAAAGGGTCTTGACTGCGAAGGAAAGGAAGACGCAGATCgatgacaaaaacaaattaacagaGCACTTCATCATGGCTCTTCCCATGCTACTCTCGAAATACCAGACGGACGCAGAGAAAGTAGCCAACCTCCTACAGATCCCGCAGTACTTTGACCTGGATGTGTACAGTGCTGGGAGGATGGAGAAGCACTTGGACGCGTTGCTAAAGCAGATCAAGTTAGTGGTGGAGAAGCACACGGACACGGAAGTGCTGGAGGCCTGCAGTAAGACCTACAGCATCCTGTGCAGCGACGAGTACACCATCATGAACCGCGTGGACATCGGCCGCAGCCAGCTTATCGATGAACTAGCCGACCGCTTCAACCACTCGGTGGAGGAGCTGCTGCAGGCGGGGGAAGAGGCGGACGACGACGACATCTACAATGTTCTCTCCACTCTCAAGAGACTCACAGCCTTTCACAATGCTCATGACTTGACCAGATGGGATTTGTTTGGGAACTGCTACAGGTTGTTAAGGACTGGAATAGAGCAGGGATCTATGCCAGAGCAGATAGCAGTACAGGCTCTTCAGTGTTCTCATTACTCCATACTGTGGCAGCTTGTGAAGATCACAGAAGGCGCTCCATCCAAGgaTGATCTCCTAGCGCTTCGCAGGGTTGTGAAGTCTTTTCTAGCTGTGTGCCAGCAGTGTTTATCCAACGTCAACACACCGGTTAAAGAGCAGGCGTTCATGCTGCTATGCGACCTCTTGATGATCTTCAGTCACCAGCTCACCACAGGGTCCAGGGAGGGTCTGCAACCTCTGGTCTTCAACCCAGACAGCAGCCTACAGAACGAGCTGCTCAACTTTATCCTAGACCATGTGTTTATAGACCAGGATGATGAGAATCAGAGTATAGAGGGTGATGAGGAGGATGAAGCTAACAAGATCGAGGCCTTACACAAGAGGAGAAACCTCTTAGCTGCCTTCAGCAAGCTCATCATTTATGACATAGTAGACATGCCAGCCGCTGCAGACATTTTCAAACACTACATGAAGTACTACAACGATTATGGAGACATCATCAAGGAGACTCTAAGTAAGACCAGACAGACGGACAAGATACTGTGTGCCAAAACACTCATCCTGAGTTTACAGCAGCTCTTTAATGAGCTGATCCAGGATCAGGGGCCTAACTTGGACAGAACCTCATCTCATGTGAGCGGCATTAAGGAATTGGCCCGTCGCTTTGCCCTGACCTTTGGCTTGGACCAGATCAAGACCAGAGAGGCTGTGGCCACGCTGCACAAAGATGGTATCGAGTTCGCCTTCAAGTATCAGAATCCTAAAGGACCAGAGTATCCCCCTCCGAATCTAGCCTTCCTGGAGGTTCTCTGTGAATTTTCCTCGAAGCTTCTTCGCCAAGACAAGAAAACAGTGCACACCTATCTGGAAAAGTTCATGACAGAGCAGATGATGGAGAGGCGGGAAGACATCTGGCTGCCTCTCATCTCTTACAGGAACTCTCTGCTGACGGGTGGAGATGAAGACCGCATGTCCATCACcagcggcagcagcagcagcaaagcTGGATCTATACGGAGCAAGAAGGGCCGTCCACCCATGCACAAGAAACGCATCGAGGAGGAGAGCGTGGAGAGCTCGTGGATGATGAGGAATGACGCCCTGCAGACTCCCGGAGGCCTGCAGACGCCCCAGCTCACCTCCACCGTGCTCCGAGAAAACCCCCGGCAAGCTGCTGAGCACCTCCCAGACCAGAACTCTGAGCCCGGCTCTGAATCCGACTACGTTCACAATCCTCAGATCCAGATGTCCTGGCTCGGCCAGCAGAAGATGGAGGAGGTGAACAGGAAAGAGCGCACAGCCATGAACTACATGAAGGCCCGCAGCGGAGGCGTGCGACAGACCGTACGGGGTCTCATGGAGGACGACGCAGAGCCCATCTTTGAGGATGTCATGATGTCGTCGCGAGGGCAGCTGGAGGACATGAGTGAGGAATTCGAGGACACCATGGTCATTGATCTGCCTCCTTCCAGGAACCGACGGGAGAGAGCAGAGCTAAGACCGGACTTCTTTGACTCTGCAGCCATGATCGAGGATGAGTCGGGTTTCACAATGCCCATGTTCTGATGTGCCACAACCGATGGAAAAACAGTATTTGAAGTGATTCAAGGGCTGAAGAGACATTCACATGAGAGCGGAAGCACTGGTGTCCAGGTTCAGAGATTCTGGAGCAAACTCTCCGCAAACCCTCAACTGTCCTCTTTTATCAAACGCCGCACAAGAGGAGCTTTTATTCATCCAGAGATTATTTTAACAGATGCGGTCCAGTCACGTCACACACGGTGAATCTTTCTGTCGAACAAGTTCTTTGTCAGCTCATTAGAATCGCACTGGATGGGATTTTACATTGTGGTACAAATTTATCATGTAAGAATGTACGGTCCTATATGTTCGAGATGTACATATTTGTGTTTATCCATCCTACTATGTATATGCCCTGTACAGTTAGAGTATGAAGTCGCTTTTACTATCAGGTCAACGAACGGATTTCTCCTACCCAGACGAGCGCTCGATCTTCGGTCTGAAACAACAGAACTACGGTAAATGAAGGAAGGTGGGTAACGTTTGGTCAGTGTTAAAAATGCAGTCATTATTGTCAGAAAGCCAAAAATCTCTGTGGCAGTTGAAGGGGCGTTACACTACGTATTGTGTATTTTGGCTTGCAGAAGAATTTGAATGGTCAGTATTTTATTTCCAGTAGATTTAGTTCTAATGAGGTGAGGTTTATTTGTGTGAGATGTCTATACGGCAGGGTTTTGGTCAGTTGCTCTTGTCCGGGGCCGCGTGTCGAGTCGGGCCCATCCGAGTATCGCCTCCGTTTAAGTGCTTTATGGTCCTGTGCTatcaaaaagtgaaatgttaTACCGTCAGCAACATGAGTTTCccatgatcatcatcatcatcatcatttttcCCCTGCCCCCGGTTAGTTTTGCTAGTGTATCtgtaaattgtacattttcaaTCCGAAATGGTTTTCTTTTGTACAACCTAGAAATGTACCACTTTCCCTTTTAATGGAAAACTGTTCTAAAACTTTTCTTCAGTGAACTTATGGAAAACTcactttttcagaaaaaaaaaaaattaaatatgtaatcaTGAA

Function

GO: NA

KEGG:

id description
K06671 STAG1_2, SCC3, IRR1; cohesin complex subunit SA-1/2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU16629 lncRNA upstream 21496 11614241 ~ 11618863 (+) True G11207
TU16626 lncRNA upstream 26793 11609251 ~ 11613566 (+) True LOC122328936
XR_006247857.1 lncRNA upstream 29272 11610475 ~ 11611087 (+) False LOC122328936
TU16616 lncRNA upstream 138773 11500389 ~ 11501586 (+) False mast3a
TU16609 lncRNA upstream 183495 11456326 ~ 11456864 (+) True G11191
TU16942 lncRNA downstream 420953 12100875 ~ 12101126 (+) True G11419
TU17037 lncRNA downstream 657745 12337667 ~ 12339049 (+) True G11505
TU17175 lncRNA downstream 865431 12545353 ~ 12545592 (+) True G11590
TU17178 lncRNA downstream 934453 12614375 ~ 12614596 (+) True G11593
TU17180 lncRNA downstream 936073 12615995 ~ 12621414 (+) True G11595
XM_043225009.1 mRNA upstream 34726 11598887 ~ 11605633 (+) True gyg1a
XM_043224967.1 mRNA upstream 41709 11593151 ~ 11598650 (+) True agtr1a
XM_043222120.1 mRNA downstream 5855 11685777 ~ 11690923 (+) True msl2a
XM_043261691.1 mRNA downstream 30262 11710184 ~ 11782407 (+) True ppp2r3a
XM_043261695.1 mRNA downstream 91866 11771788 ~ 11782407 (+) False ppp2r3a
XM_043263607.1 mRNA downstream 107770 11787692 ~ 11899378 (+) False fndc3ba
XM_043263600.1 mRNA downstream 107811 11787733 ~ 11899378 (+) False fndc3ba
TU16617 other upstream 134629 11502402 ~ 11505730 (+) False mast3a
TU16613 other upstream 140281 11496360 ~ 11500078 (+) False mast3a
TU16615 other upstream 141422 11496360 ~ 11498937 (+) False mast3a
TU16565 other upstream 299248 11339863 ~ 11341111 (+) False mrpl34
TU16555 other upstream 383595 11240126 ~ 11256764 (+) False kcnh2a
XR_006252734.1 other downstream 228151 11908073 ~ 11937590 (+) False pld1a
XR_006247874.1 other downstream 599989 12279911 ~ 12280014 (+) True LOC122328992
XR_006247873.1 other downstream 600668 12280590 ~ 12280659 (+) True LOC122328989
XR_006247863.1 other downstream 601450 12281372 ~ 12281504 (+) True LOC122328950
TU17183 other downstream 943901 12623823 ~ 12626387 (+) True LOC122358236

Expression Profile