RNA id: XM_043263798.1


Basic Information

Item Value
RNA id XM_043263798.1
length 5055
RNA type mRNA
GC content 0.46
exon number 27
gene id cc2d1b
representative True

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 8386877 ~ 8403214 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGCTGTTTTCCGCTGCTGGGCGTGGCTTgtctgtgatgtttttgttgcaCTGGTTTCAGTAGCAAAACAAAGCCAATGTCATATTGCTCTATTTTCTAAACTGCGTTTTCATTAGAAAATTCACTGAGGGTGTCTTCGTCAAATGAACTGTCAGGTTTGCCAAACGCTGTGTACGGCAGATATATAGGAAGGAGGAAGTGGAGTGGGTTTACTGTTGGCGAGGAAAAGAAAGTAAACTGCTCCCCGGCGCTCTTCTGGATCAGCGGGGTGTGTGCCCGTCCTGTAACTAAAGTGCGGAGGAGCGGGAGCTGGACGGGATGTTTGCCCGGAAAAACAAGCGAGCGGCGGCGCCGAAAGGCCAAGGAGCTGCTGCAGCCAAACAGATGGGATTGCTGCTTGATTTCAAGCCAGATGATATGATGAACATGGAGCAAGATCTGGATGATCCAGCTTTAGAAGCAGAATTTGCTGCCATTGTTGGGAAGAAACCCAATGTGGCTCCCAGGGGGAAAAAGGCTGGTAAAGCTCCATTACCGATGGAGGATATTGCAAAAATGGCGGAGGCTTGCATGAAAGACAtcgatgatgatgaagatgacggTCTGGAGGATGACGAAGACCTCTTGGCTGAGCTGCAGGAAGTGGTTGATGAGGAGGAAACGGAAGACTCGGGTACCACAACCCCCGCGTCCCCCGTTAGTGCGGAAACCCCTTCAGCAGAACCTACACCAGCCAGCCAGGACAATAAGGTTTATTCTGTGCCTGGTAGCATTGAACACACGTTAGAGGAGAGGATAAACCTGTATAGAATGGCTGTTACCAATTCCAAAGCTGCAGGGGAAACCTCCAAAGCTCGGAGATATGAGAGAGGCCTCAAGACATTACAGACTATGTTGGCATCCTTACGGAAAGGAGGTAAAATTGACGAAACGGAGATTCCCCCTCCAGTTGCATGTGGAGCGTCTGGTGGTCCCAGTCGGCCCTCTGCCCCCGCAGCTTCACCTGATGACAGCGCTGTCGAGATCTCCCCCGTCTCCGCAGAGGCCGCCCCTGTTGTCATGGATCCAGCATCAAACACTAAAGAAGAGTCCTCCGGTGTAACGTCTCCAGCCTCACTGTCATCTCCAGAAGGGGAACGTGTAGCAAGTGGCACTGAATTGCACTTAGCAGACTCACCAGCCGGACAGCTCAATAAAGACGTTCTGTTAGAGCGACAGAAGGAATACAGAATGGCAGCTCTCAAGGCCAAACAAGCAGGAGACATTGACCAAGCCAAAATGCATATAAAGACCAGCAAGGGATTCGACGCAGCGATTGAGGCTTTGGAGAAAGGCCAGCTGGTGGACACGAGCTCCCTTCCGCCCCCTCTGTCTCAAGCCTCTACAGTTACTCCCCATGCACCTCAAAAAGCAGTTACGTCACCTTCAGTTCCTGCAGACAGTGTTTCTGGTCCAGCTCAGCCCCAGACCGTTCTTGAAGCTCTGGAACAGAGGATGGCCAAGTACAAAGAGGCCTTCACACAAGCTAAGGCCGGCGGAGATGAGCGCAAAGCACGCATGCACGACCGCATTGCTAAACAATACCAATCTGCCATCCGTTCCCATAAAGCAGGGCGACCTGTCAATTTTGATGAACTTCCAGCCCCTCCAGGTTTTCCTCCAATCCCAGGCCAGAAGGCTGCTTCTCCAGAGCAGGGATTGGCTGCAGTGCTGGAAACGGCCAATAAATTAACATCTAATGAAGCTGAAGCTGGTGATGGTGAAGAAGACGATGAAGATGGAGAGGAAAAGGTTAAAGCTCCAAAAGCTGGCGACCAAAAGAAGCCCACTCTTGCTGTACAGCCAACGGTACAGAAGCCCAAGAGGACCCCTTCACCTTCTCCAGACAGAACGTCTAAAAGAGGAAGTCTCCCTGACACCGCTCAGCAGCAGCTGGAGTTTCTGGAAGGCCGCAAAAAACAGTACATGAAAGCAGCGTTGCAGGCAAAGCAAAAGAATGACCTTGAGCAGGCCAAGACCCTCCTGCGTGCAGCAAAGGGTTTGGAGCCCATGATTGAAGCCACCCGCAGCGGCAAGATGGTGGACATAAGCAAGGTGCCTTCACCGCCAGGAGATGAGGATGAGGACTTCATTCTAGTCAATCACAGTGATGTTCAGATCTCAGAGAAGGCTGAGGAGGTCTACACTCAACTCACCAAACTACTCAAAGAGCAATACGAGaaATGCGTGAGGCACTCCAAGCAGTTCACACACATGGGGAATGTAGCAGAAACAACCAAATTTGAGAACATGGCAGAACAATGTAAGAAGAGCCTGGAGATTCTTAAACTGGCCCAGAACAGGGGGCTCCAGCCTCCTAAACATCACTTTGAGGAGAGAACATATCGCACTGTCAGGATTTTCCCAGAGCTTAGTAGCACAGACATGGTTGTGGTCATTGTAAGAGGGATGAACCTTCCTGCTCCCTCTGGTGTTGCAACAAATGATTTGGATGCTTATGTCAAGTTTGATTTCCCATACCCCAGTACAGATCAACCGCAGAAACATAAAACATCAGTCATCAAAAATACCAACAACCCAGAGTATAACCAGAACTTCAAACTGATTATCAACCGGAACCACCGTGGCTTCAGGAGAGTTATACAGTCTAAAGGCTTGAAGCTGGAAGTGCTGCACAAAGGCGGCTTCCTGAGAAGCGACAAGCCGGTAGGAACAGCCCAGATCAAACTGGAGAAACTGGAAACTGAAAGCGAAGTGAGAGAGATAGTGGAGCTCATGGATGGGCGGAAGGCCACCGGTGGTCGTCTGGAGGTGAGGGTGCGTCTCAGAGAGCCGCTGGGTGGGCAGGACCACCAGACCGTCACAGAGAGATGGCTGGTGCTAGAGGAGCCACAGGTACTGCTGTAACTGTGACGCTGGTTTCTTCTCCTCAACGGCTTGAGGCTCTCAGCGCTTTTATCAGAGTGGATGAAGGTCTGGACGATGAAAGCTCAGTGGTGCTGCGAGGCTCTGGTACAGAGCACGTGATGGAGATCGTGAGGAACTCGAGGGACTTAGCTTTGTCTATCAGGGTAAAAGAGGTTAAATCAGGATGTAAGAGTTGGGgtggttattaaaaatattaaaaagaggAGCAGAAAAACGTGCACGGATTGATATGCCTTTTAAACGGGCCTTTTGAGATAGATTGCCTCTTGATTTTGTAATAACATTCACCCCAACTGTTACATTAATGCATTGGAGCTGAAGCCAATGAGagctaacctttttttttttttttttttttttttttttttaactgctctgGGATGCACTTACGCACTAATGCCAAAGTAATCACTGCTGCTGCAGTAAGATGAACGACTTAATCTGTTCCCCCTCAAACTAGGAACCTGTTCCTGCCGTATCTCAAATACTAATGTATGACTGCTATGCAAATGAGTTCTACACGATTAGCTATGCAAAACGGTTTGCGTTTGAATCCCAAACATTTTGTCAGACATTTCAAAACTTGTTTACGTCCTTTGTGTATTTACTGCTTGATTTATTACGGACAGGCCGCGTAAAAGCCAAGCcgttaaatattatattccgTATAAATACCATTAAAGCCGTAAACGAGCTTTTACTAATTGAACCAGATGTGAATTATTCATTGAACATTCTCAgtagtctgtgtttgttttaagagGTAAACGAGCGAGCGTGCCATGTTTGGGAATTATTTCAATTGTAATTTTTCCAGTAAATTTAGGCTTCCACGGCATTTTGCTGACGATCAGGACCAGAACTGGTGCTGCAATACTCATATTCAGACTCTCTGAACAGAAGTGCCAGTGTAGTTACCTTATAAGTTAGCAAAAGTAGAAAAACGTTTTGTATATATGTTAAACTTAATATATGAGAGAAATCTTTTCTCGCTCTTCTTGCACTTGACGGTTGTTCTGTACTAGGGTTGCTCCTAGTAGGCACTTTATAGCCACATATAGCCAATGTTTACATTACGGTTGACTGCGCAGTTAAGTTGAGACACATAAGACGACACCTTCCATTAATGACCTCACAAATGGCTTAAAGGACTAGCTCAGccagaaatgaacatttgctgaaaattgaTTTTACTTGGgtcatccgagatgtagattcAGCGTTACATTACTTACTACcagcagtggatgggtgccatcagaataagagttcaaacaactgataaaacatGAAAGCCATCTACATGCTCCAGTTCATCACTTAAAAGCCGCATGCTGCTTCTAGTGAAAATGTCCATCCCCGTGCCCGTTTCGGCTTGTAAATAGTGGCGCTTTTTACATCCAAGACGAGGTATCTTTTTCACTGGGTAAAGCAGTAAGTCATGGATAGAAGACTCAgattttagctggaagcaatAATTCCGAGTTAGAGTCTTatttgatggactggagtcatgcaAAGCGCTTGCggattcatttgatttttttttttttatatcagctgtttggacccgTTCATTCTTATGATCCATTAACTGAGAATCTAGAATTTGTCCAAATCTGTTCTAATAATTTACTCACTTCATACCAAGATTATCAGCACttttgaatttttgggtgagctattgttttttttgccttctGAGTGAGTCTAAAAATACCTCAGTTTTGCCCCAATTATATTTTGTGGTCTGTTGGATTATAACTTGTGAAGAATTGACTGACATTCGGCTTTTAAGCATGGACAATGTACAATCTAAATCCCTCAGTCTAGTCGGTATTCTGTCCATTCATTTCAGTTCCAGTCGTTCCCATCCCGTGTGAATTGTGTGACTTGGCGCATTTCAGATCCAGCTTTGTCCTGGTGTAAGTTATGCTGTCAGTGTTGATTcttcattaaaaagtttttaaatctgCCATAAGGCTCATCTTGAAAAACGCGGGCCTCAATTGTCATGTTACATAACATGTTTCATTTTCTACTCTTTCCCTCAAGAGTCAGccatgtaatttattttctttttacatcgTTTCGTTAAACTGTTTTGTTATTAAACGATAAAAACAAA

Function

GO: NA

KEGG:

id description
K18260 CC2D1; coiled-coil and C2 domain-containing protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU15209 lncRNA upstream 124047 8219265 ~ 8262830 (+) True G10219
TU15180 lncRNA upstream 296341 8081817 ~ 8090536 (+) False G10198
TU15220 lncRNA downstream 119188 8522402 ~ 8528707 (+) False G10226
TU15223 lncRNA downstream 119188 8522402 ~ 8528707 (+) False G10226
TU15224 lncRNA downstream 119188 8522402 ~ 8528707 (+) False G10226
TU15228 lncRNA downstream 119188 8522402 ~ 8528707 (+) True G10226
TU15298 lncRNA downstream 156884 8560098 ~ 8561513 (+) True G10271
XM_043263850.1 mRNA upstream 4434 8373238 ~ 8382443 (+) False elovl1a
XM_043263841.1 mRNA upstream 4434 8377292 ~ 8382443 (+) True elovl1a
XM_043218822.1 mRNA upstream 68410 8315131 ~ 8318467 (+) True glula
XM_043256906.1 mRNA upstream 995842 7388418 ~ 7391035 (+) True ptger4c
XM_043256194.1 mRNA upstream 1040222 7340271 ~ 7346655 (+) False dmbx1a
XM_043216826.1 mRNA downstream 36665 8439879 ~ 8486904 (+) True clcn2a
XM_043216804.1 mRNA downstream 39963 8443177 ~ 8486904 (+) False clcn2a
XM_043216836.1 mRNA downstream 39963 8443177 ~ 8486904 (+) False clcn2a
XM_043216810.1 mRNA downstream 39963 8443177 ~ 8486904 (+) False clcn2a
XM_043216818.1 mRNA downstream 39963 8443177 ~ 8486904 (+) False clcn2a
TU15202 other upstream 279100 8106865 ~ 8107777 (+) True G10212
TU15034 other upstream 804492 7505591 ~ 7582385 (+) False G10108
TU14783 other upstream 1399758 6986298 ~ 6987119 (+) True G9925
TU14736 other upstream 1694502 6691668 ~ 6692375 (+) True G9889
TU14734 other upstream 1696098 6690372 ~ 6690779 (+) True G9887
XR_006252402.1 other downstream 759397 9162611 ~ 9171915 (+) False olfm3b
TU15832 other downstream 1343380 9746594 ~ 9751212 (+) True arpc5a
XR_006247735.1 other downstream 1508414 9911628 ~ 9916861 (+) True znf414
XR_006247736.1 other downstream 1508414 9911628 ~ 9915491 (+) False znf414
TU16308 other downstream 2307916 10711130 ~ 10718194 (+) True G10979

Expression Profile