RNA id: XM_043263870.1


Basic Information

Item Value
RNA id XM_043263870.1
length 4607
RNA type mRNA
GC content 0.45
exon number 9
gene id gpc1b
representative True

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 22044868 ~ 22105101 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CCTGCAGATGGTGCcttcgctcgctcgctcgctcgcgcGCCCGCCCCGCTCCGCCTCGCACTCGCCCGAGCGCGAGCGCACCGACGCGTCTCCGAAGTGTGCGCTCCCGTGAGCTCATGTCATTCCTCCCTCTCCGCTCCgtcatctctcacacacaggaTTGCGCTCTCCGTTTTAATTCAGGCTGCCGCCACTGAATAAGACACTGCGCGTGGGAGCAAACCGGTGCGCTTTTTGGAAACGGGAGGCTTCGCTTTGGACGCGTTTATCCGCTGCTCTTCGCCCTTGGATTTGATTCGCACACCACACTTCTTTCTTCTGTCCAGAATGGGTTTTGTCGTGCCGGTGCTTCTGTGCGCTCTCGCCGGGCTGGTGTTCGGGGACAGTAAACCCAAGACATGCTCGGACATCAGGCACTTCTACAACAACAATGGGTTCAATCTGAACGGAGTCCCGCAAACAGTAATATCTGGTGAGCACCTGCGGGTTTGTTCTCAGGGTTACACCTGCTGCACGTCTGGGATGGAGGAGAACCTTCTGAACCTGAGCCGACGAGAGATTGAGACTCAGGTGAAGGAGTCTGGACGTACCTTACAGGCCTCTCTCAACGGCCAGTATAAGAGCTTCGACGatTATTTCTTGGAGCTATTGAATCGTTCTGAAGCATCGCTCCAAACCTCTTTCCAGACTGGGTTTGGACCTCTCTTCTCCCAAATCGCGAAGGTGTTTCAGGATCTGTACTCAGACCTTCGGCGCTACTACCGAGGGTCCAACGTCAATCTCGAAGAGGCGCTGAACGAATTCTGGGCCCGTCTGCTGGAAAGACTCTTTAAAGCTTTAAACCCTCAGTACATTATTGGAGAGGAGTATCTGGAGTGCGTAGCCAAGCAGTCAGAAAGTCAGAAGCCGTTTGGAGACACGCCGAGAGAGCTCAAGACCAAAGTCACACGCACGGTTATCGCTGCCAGAACGTTTGCGCAGGGTCTGGTGATCAGCGGCGAAGCGGTCAGGAAGGTTTCACAGGTGTCTCTGAGCACTGAATGTGTGCACTCCGTCATGAAGATGGCATACTGTCCTCACTGTAGTGGTGTGGCTTTGGCCAAGCCCTGCCCAAACTACTGTAAGAATGTCATGAAGGGCTGCCTCGCCAATCAAGCAGACCTGGACTCTGAGTGGAGGAACTTAGCAGaTGCTATGCTGGAAGTAGTTGACAAACTGAGCCGGCCTTACAGTGTGGATTCGGTGGTTCTATCTTTGCCAAAACGCATTGCTGAAGCGATTCTCTACATGCAAGACAACCTCAACACGTTCAACAATAAGgtgtTTCAGGCATGTGGTTCTCCTACTCAGACCTCCAAAACTGAGGATCAGATCAAACGAGGTAGAAATACAGCAGAAGAAGTGAGCGGCACCCCAGGAGCCCAACTGGAGAAAGTGTTATCCGATGTGTCCAGAATGTTGAGGGATATCATGCAGTACTGGGTCCATTTGCCCAGAAAACTGTGTGTGGATCGCGAGTCTGCACCGAGTGAAGCAGACAGATGTTGGAACGGAATGAGCGTGGACAGGTATCTGCCAGAAGTGATGGGAGACGGACTGGCCAGTCAGATCAATAATCCTGAGGTGGAGATTGACATTACCAAACCAGACATGACTGTACGCAAACAGATCATGCAGCTTAAGATAATGATCAACCGACTGAAGTACGCCATCAATGGAAATGATGTGGACTTCCAGGACACCAGTGATGATATCAGCGGCTCAGGAAGTGGAATGTGTGCCGACGATCAGTGTTCCCGTGATCCACGTTTAACGGCCTCAAACGTGGACAAACCCAATGTATACGCCTATCCGTCAGAGAACAAGAAGGTGGTGAACGGAAGAAGCAGCCAGAACCTTCCTTGCGTCAGCCTCTACCTTCTCTCATTGGTCACAGTCTTGCTTAGGCGATAATTGGCAGGCAATTCCACCAACTGGGACTGAGTACAGGACTGGGTTGGATTGTGGAGGGGCGGGGTTAGTCACTTTgccaaaacaaacatgcaaacatCAACCGAAACCGGCGAATGCATCACTTTTTTGTCTTGAATAAGAACACCATGGAATATTCTTAGATCTGTGTACTTTTTTTCGTCTCTTATTTGATATATGACACCCCTAGAGCTGGTCTTTTTGCTTGTCTTTATGTCTGTGGTGAAAAAGGTCTCCGAGAATGCGCCAATCTCTAACGATAGCTATGAAAATCCACcccaacaaacaaaacatgctgGTTTTTCcttattcagaaatcattttaggttatatttatttattaattgagaCCCATAAAGATAAGACGTCTCTGGCCATTCAAGCTAGGGAATCTCCGTCAACATTCGATCAAAGTGAAGAAACTGAAAGAACCCCGTGTTCTTCTTATCTTTGTTTTAAAGCCTCTCTAATCatgaaaacaagctttttttgaGTCTTGTTTCGTGAAGACCagctgtctctcgctctctctgtctaCTTCTCTCTCTCGTTTATTGTACTAGTTTCCGCACTCTGCTTTGCAAATGGGTTTCAGGGgccattttaaagaaaacacaacatGTATTTACTCTGGATGTAAATAAACGTGTACTAACCACAGTCACATTTTCAGTATATCCTTGAGGACCCTCAACAGCACTAGAGCAATATTTGGGATATAACGTTAATGCACCAGCAATGAGAAAGAGACGGCAGCGTTTTATGAAACGATGTGGGACAGATAATATAATGACCGTCATCTCAGAAAGGGATTTTGCACGTGGGAAAAGACAAGCCGGGAGAATGAGACTCGAAATGTGGAGGGGTTTCTGGACATTGTTAATTTGATATCGATTCAAACCTCGtagggatgtgtgtgtgtgtttgtgttatgtGTGAGTGCACTTCAGAGAAAGCGCTGCTTTGTAAGTACTCACTATACAAATATACACGTGTACTTGATACATGCTGCATCCACGTCAGATCTGATTAGTTCAGTGAGTCACAGATGTGCGTCTCAAATATTTCCCAGCCCTTCATTAGCAGACAAGTTGGATTGTTTATGGTACGCACATGTGGATGTGAAACGGTGTTGCGTAAATTTTACCAACAAAATGCTGTCGGTTTTAGATGACAATTGCACTCTATGCAAGTATGTAAACGCAAATAATATAAGCATGCGTACTAATATTTTGTGTCTATGTCGCGATAGCACAACTTCCTCAAGGGGGCAACCATCAAATGTTTGCAATATTGAATCTAATTTGCTGTAGCTATAAACATGCTAATTGTTGGACTAGCTTGCGAAGCTAAACAGCATGCATTCCTCTCATATTTGTGTTACATTATGAAATACACCTAATTTCCAACATCCCCATGACCTTACACTGTAAAAGTGGTTTGGAGAATCGATTGGAAGGTTGAAATAATGTAAGCGCGCGTACTAATGTGCATTTTAGCGTTATGTAACGATAACGCAACTTAGCACGTCAACGAGGTGATCGAGTTAACATCAAAAGTTTGCATCATTAAATCAAATGTTGTTGTTTAGGTAGATATAGCTGTAAACGTGTTCGCCGTTGGACTAACTTGAACTAGCTTGCTAAGCTAAATTCATTTGTTCAAATGTAATTCGTGCTTGTAACTGTCGATAGGTAAAATGTTTGCTAAAACTTACCCGATACCCTCAATAGTGCACCTTTCATACTCATGTTACATTATAAACACTGAAGCTAATTTCCAGCATTCCCGGTGACCCTAGAGTGGATACGAGTTTGGAGAATGGACGGATTTAGGCTCGTTTCACAACGCAGTGTAAAATCAAGCATTTGCGTTCTCTTACTTGCATAGAGTTTCAGACCtaggagagagaaaagagcTTAATTTgttgctctttttaaaaaaacgtagcATTTGTAGGGAAGTGGTGTAACGGATTATGGTTGCCATTGGCTTTGCAGAGAAAGTGCTGCAGTTTCGGTCACTATAAGTGGCGTACAGATCTGACCTGGTCTTCGAAATGGAGAACAACATCCCCTCCTTGCACTTTGCATGACGCACGCGGCAACGTCCGCATGACTACATCACATGATCAGTGGTTGATAACAGAGAAATATCCCACAGGCGGTGTTATGGATTGTTTGTTGATCGACTGGATCAGATGTGGTTGAAAAAACAGACCCGTGGCACAATTCACTAACTATCTGTAGAGCGATCTGACCTGAGTCTTAACTGTCTTTAGCATGTTTGTCAAATCATTGACAGTTAGTAGTCTGACCCCAGGTCAGCTTAACAGTCCCACTTCTAGGTGCAATGGTGTAACGGTGAAACTGTCACTGGCTCTTTACTGATGAATGTGGCTGATATTGTCAAAATGTACTGAgatgaaaaaatttaattgcattctggtatatactttattatttttgtttgtttgtttaaaaaaaacaaaaacaataatggGGAGTTTGTGTTTAAGGTCGAAAGTAGAACATTTTGAAGAGACTGAGGAAATTATCTGTCCATTGTTGTTGtatgttctttaaaaagaaagagaaaatccCTTGTGTCAATTATAgatcaaaagattttgaaaa

Function

GO:

id name namespace
GO:0031225 anchored component of membrane cellular_component
GO:0005886 plasma membrane cellular_component
GO:0043395 heparan sulfate proteoglycan binding molecular_function

KEGG:

id description
K08107 GPC1; glypican 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU21389 lncRNA upstream 129840 21913520 ~ 21915028 (+) False G14484
TU21388 lncRNA upstream 129901 21913520 ~ 21914967 (+) True G14484
TU21376 lncRNA upstream 149390 21895171 ~ 21895478 (+) True G14477
TU21375 lncRNA upstream 149737 21894608 ~ 21895131 (+) True G14476
TU21373 lncRNA upstream 178029 21865738 ~ 21866839 (+) False fndc7a
TU21457 lncRNA downstream 357933 22463034 ~ 22463853 (+) False LOC122327302
TU21455 lncRNA downstream 362759 22467860 ~ 22472603 (+) True G14532
TU21458 lncRNA downstream 370680 22475781 ~ 22476202 (+) True G14535
TU21471 lncRNA downstream 407070 22512171 ~ 22513937 (+) True G14540
TU21474 lncRNA downstream 417310 22522411 ~ 22576292 (+) True G14541
XM_043253209.1 mRNA upstream 18781 21929297 ~ 22026087 (+) True gpc5c
XM_043253218.1 mRNA upstream 18781 21929297 ~ 22026087 (+) False gpc5c
XM_043222546.1 mRNA upstream 133199 21896676 ~ 21911669 (+) True fndc7rs1
XM_043219847.1 mRNA upstream 177469 21857212 ~ 21867399 (+) True fndc7a
XM_043222534.1 mRNA upstream 191861 21843575 ~ 21853007 (+) True LOC122327294
XM_043218532.1 mRNA downstream 29253 22134354 ~ 22326172 (+) True LOC122324242
XM_043222559.1 mRNA downstream 356815 22461916 ~ 22485655 (+) True LOC122327302
XM_043260236.1 mRNA downstream 410304 22515405 ~ 22549867 (+) False epb41l3b
XM_043260198.1 mRNA downstream 410475 22515576 ~ 22549867 (+) True epb41l3b
XM_043260190.1 mRNA downstream 416149 22521250 ~ 22549867 (+) False epb41l3b
unassigned_transcript_253 other upstream 116049 21928747 ~ 21928819 (+) True trnam-cau_1
TU21370 other upstream 183426 21860891 ~ 21861442 (+) True G14471
TU21151 other upstream 328581 21715355 ~ 21716287 (+) False ccl20a.3
TU21079 other upstream 562550 21481676 ~ 21482318 (+) False LOC122354659
TU21008 other upstream 683160 21337682 ~ 21361708 (+) False G14211
TU21525 other downstream 586150 22691251 ~ 22695330 (+) True fcer1gl
TU21973 other downstream 1440005 23545106 ~ 23547974 (+) True G14831
unassigned_transcript_256 other downstream 1631950 23737051 ~ 23737122 (+) True trnaw-cca_1
XR_006247041.1 other downstream 1830820 23935921 ~ 23938943 (+) True LOC122323670
TU22269 other downstream 1978737 24083838 ~ 24088441 (+) False LOC122327442

Expression Profile