RNA id: XM_043263927.1


Basic Information

Item Value
RNA id XM_043263927.1
length 4686
RNA type mRNA
GC content 0.47
exon number 18
gene id pde4ca
representative False

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 11541545 ~ 11580423 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AATTAGATTCAGAGGTGACTGCTTTTAAACGTTAGAGCTCTGAGGttgaattgaaatataaaagagCACTTCTGTTCATCTATCAAGGCATCCATCTTTCAGTGGTGTTGACAGCACGTGAGCCGCTCTGCAGTCAGCACAGACAAACCTGCTGAGTGAGAGCGACAGGACACTGCTCACCTCCATAGGGGCATCCAAACTGAGATAAAACAGGTGTCCCGGCAGGATGTTCTCACAAACCATTTGCTTTTGAGCTAGAAAGCTTACACGCCACAGCCTGGGAAAACAAACTTTCTGGGAAGAGACCAAAATGCTGCTCGTATGGATTAAAGATCTGCTTAAAAATGATGTAAAGTAACATACTttgcaggggaaaaaaacaatagatCGGACCAGATCTTCTCAGTTTTAGTGAGTTGCCTCCCATTTTAACAACATGAAGAGAAGCACTTCTTTGAAGTCTTTTTGGACATCAGAGAGGGAATGGGACACTGGGAACCAGCAGGGCCTGCCCGGATCCAAATCCATACCCAGCCACCGCACAGTGAAGAGGACGTTTTCAGGGGTCCTCCAGCTCCCCCGTCTGTCCCGCCGTCTCTCGGCTCAGGGAGACTCAGAGTACTCAACCCGCAAGGCCACCTTCTGCCTCGGCGTCGCCAACGGCCTGGAGCTCGACGCTTTTCAGGGCTCAAGTTTTGATGTTGAAAATGGGCTGTCAGTGGGTCGCAGTCCTCTGGAGTCCCAGGCCAGTCCAGGCTCCGGCCTTGTGCTGCAGGCCAATTTCCCTCACAGTCAGCGGCGGGAGTCCTTCCTGTATCGCTCCGATTCTGACTTTGACCTTTCACCCAAGGCCATGTCCAGAAACTCATCTACGGCCAGTGAGCTGGAAGAGAGTTTGAAGCACTGGGAAGTCAACTGGCTAAATCGCCATGGAGAAGACATGATAGTTACACCATTTGCACAGGTCCTTGCCAGCTTGAGGACTGTGCGGAGCAACTTTGCTGTTTTGACCCATCAGCAAGACCGTGTACCGAGCAAGAGGTCCACTGGAAGCAACCCACCATCCATGTGCAAGACGAGCCTTCCAGAGGAGCCGTTTCAGAAGTTGGCAGTGGAGACTCTGGATGAGCTGGACTGGTGTCTCGAACAGCTCGAGACTCTCAAGACGCGTCACTCAGTCAGTGAGATGGCATCTAACAAGTTCAAAAGGATGCTGAATCGAGAACTAACCCAGCTGTCAGAGACAAGCAAGTCAGGAAACCAGGTCTCAGAGTTTATCTCCAGCACCTTCTTAGAGAAGCAACATGATATGGAGATTATGTCCCCCCCAAccaaggagaaggagaagaaaaagCGGCCCATGTCTCAGATCAGTGGAGTGAAGAAACCCACACACAGCTCCAGTGTCGCAGCTTCCAGCATCCCACGCTTTGGCATCAGCACTGACCAGGAAGATCTGCTGGCCAAGGAGTTAGAGGACTTTGACAAATGGGGTGTGGATATTTTCAAGATATCGGAGTATTCTGGCAACCGACCGCTAACGGTAGCGATGTACACAATCTTCCAGGAAAGAGACCTGTTGAAATCCTTCAAAATCCCTGTAGACACATTCATTACCTACATGATGGCATTGGAGGAGAACTACCACTCAGATGTAGCGTACCATAATAGCATCCACGCAGCCGACGTGGTCCAGTCCACCAATGTCCTGCTGTCCACCCCTGCCCTGGAGGCTGTATTCACCGACCTTGAGATCTTGGCCGCGATGTTTGCCAGCGCAATACATGACGTGGACCACCCTGGAGTGTCTAACCAGTTCCTCATCAACACAAACTCAGAGTTGGCTCTCATGTACAACGATTCCTCTGTTCTGGAGAACCACCACCTGGCTGTTGGCTTCAAACTGCTGCAGGAAGAAAACTGTGACATTTTCCAGAACCTGACCAAGAAACAGAGGCAGTCGCTGCGCAAAATGGTCATTGACATGGTCCTAGCCACTGATATGTCAAAGCACATGAACCTGTTAGCGGATCTCAAGACCATGGTCGAGACCAAGAAGGTGACAAGTCTGGGCGTTCTGCTGTTAGACAACTATTCTGATCGCATACAGGTTCTTCAGAACATGGTGCACTGTGCTGACCTGAGCAACCCAACAAAGCCCCTGGAGCTGTACCGTCAGTGGACCGATCGCATCATGGTGGAGTTTTTTACTCAGGGGGACCGAGAGAGAGATAAGGGTATGGAGATCAGTCCAATGTGTGACAAACACAACGCTTCCATTGAGAAATCACAgGTGGGCTTTATTGACTACATCGTGCACCCACTATGGGAGACCTGGGCGGATCTGGTTCACCCTGATGCCCAGGAGATTCTCGACACGCTGGAGGACAACCGGGAGTGGTACCAGAGCATGATCCCCCACAGTCCCACCTCCACCCCTGAAGACAAGGGCGGTGTGGTCGGGATGGGAGCGATGGGTGGAGGCATCGCCTCAGCGGGGGAGAAATTCCAGTTCGAACTGACCTTAGAGGAGGAAGGAGAGTCTGACGTTGAGAGTCCCGTAGACGAAGACTTGACTTCCATCACACAGGATTCCTCCAGGACAGATCCAGGAGGCAAACATCCGTCTTCGGCTCCCCTGACCGCTCGCTCCCCCAGCTGCAGGACAATGTCTTTTAAGATGGGCGAGCCGCCAGACAGTGAAGATGAAGATACAGAACTTGACCAAGAAGGGAAAAGCGTGTCTTGCCTGCGTCTGGGAACATAACACTAGTGCACTTTTTCATCgcgttctttttttcttcttttgtacCTCTTCCTGGCCCACCTCCCTACCCCTCTCCATCCCATTCTTAGCTTCCCCGGGTGGAGGCGACGCAGTGCAGGAGAGCAAAGGAGAGGTAGGAAAGCTTCCACGGGACGTTTTTATACAGTAGTCACTTTGCACTGGAGAAAGCTCTTACTCTGCGGACTGTCAAAGCGTGAAGCTTTCTTAAAAAGTTCTCGGTCTCGTGACTCCGGGATGCCACTCGGCTTCACCGTCAAAGCGTAAAACTGCCTGTGTGTGATGGACTGAGAGGAAACGTTCCTCAACTGTCTTCCTGTGACATCCCAGGTTTAAAGTTAACGAACAAGCAGAGCCGTCTGAACATATTGATCGATAAACAGGACACTTTTTATGTGAGACGTATGtgcactaaaatgtttttaaaaagatacacTGTTGACTTAAAGCTGGTTTATTAATAGCTGAACAGAACAACCTAACCTTAACACAACAGAACATCTCAGGATTCAAAGAAACGATTGCTTTCGTGTAGCAAACAGCTTGAGGGTACCCACATAGTGACCGCCGTCTTCCTTGGATCACTATAAAATCTGTAGACTGAAGTCGAGCCATGATTGTGATCTTTTCTATTAGTATGTGACGCCACCTAGTGCTTAATAGTGGAACTGGAGCCACGTTTATAGGACTTGCCACTCCAGCCGAACACAGTGGCTCTGTATTGTTGTTCCTTTGCACAGATTATACTCATCTGATCGTTTTAACTTAAAACCCTTCACCTGTATTTGTAGGAGTGCTGCTTTAACTTGCGGCATTCACAGGGTTTACATATGCTTCTCGTTTACTTTTCTATTCTGCTTCATCCAAAGCATGAGCGTaagcattattacattttaaaaccgGCTTGCTTCTGATATTCTAGGTAGCACTTTAGAAGATATCTTTGTCATTGCCAAATGTAGCTCCATCAGTAAGGGCTGGAGTCATTCTTAACGTACTGAAGATCTGCAGGGTAACCAGCATGTGTACGCGCCCTGTATGTAAGTTGGTCTCTGGAAGGCTGGGCTAGCTTGGAAACCCGCATTAGCTGTATAGGAAGTGATCGGCGTCCTTAAACCACATGtgtactttctctctctttctgtgctgGTCACACTGAAAAACATGAGGTATCTTAACATCTTTACAAATGGATGATGTCGAAAAACGAAAGTTCCGAAACGAGAGCAAGATAACACATAAAGCCAAAGTTCGTTTTCTGTGCCAGACCTTTCGTGTTCTTTGGTTTTTGGTGATTGATCAGTGCTCTGCTCTTCACAGGGACATAGCCAATGACAGTACAAGTGCCAAGCAAGCATGATCCATGCTGTACTGTAATTTCCATGTTGCCACTGGCTAATTTCCATCAATGACATCTACTACTGTCTGTAACATACTGATTTGAgcatttagttttctttcattttcctttCATTTCGATTTGTCAAGCTGAAATTTTATTTAAGAGTATTCTTGATTAATAAGTCTGTCTGACTCAGTGTGCTCATTGTAAGTCAGATTATTTGTGTCCTTTTTATACCATGgtatgaattttaatattggATACAGTGAATCTTTGTATGTAAGTGGATTACAGTAAACGAGGCTTTTAATTATTGGCTGTATGTTCATCTTAATGTCAGTCTGTGCTCTTTGTAGCAATGTTTCATGTGGTGAGAGAAATGCTTAGTGGCCATGCAAAGTTTCGACTGACTGTATCCACACAGCACACCTCTGTTTGGTCTTTTTCTGTCGCAGATCTGACAATCCCAACAGTACTGTTTACCACTACAACGCTGTTACTAATGTTGCTGTGATCGTTTTCCTGTTCCCAATGCCAATAAACGAAGAAATATTAGTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU16616 lncRNA upstream 39959 11500389 ~ 11501586 (+) False mast3a
TU16609 lncRNA upstream 84681 11456326 ~ 11456864 (+) True G11191
TU16608 lncRNA upstream 86137 11454258 ~ 11455408 (+) True G11190
TU16607 lncRNA upstream 87434 11453571 ~ 11454111 (+) True G11189
TU16604 lncRNA upstream 92112 11448763 ~ 11449433 (+) True G11186
TU16626 lncRNA downstream 28828 11609251 ~ 11613566 (+) True LOC122328936
XR_006247857.1 lncRNA downstream 30052 11610475 ~ 11611087 (+) False LOC122328936
TU16629 lncRNA downstream 33818 11614241 ~ 11618863 (+) True G11207
TU16942 lncRNA downstream 520452 12100875 ~ 12101126 (+) True G11419
TU17037 lncRNA downstream 757244 12337667 ~ 12339049 (+) True G11505
XM_043264040.1 mRNA upstream 561 11538949 ~ 11540984 (+) True mpv17l2
XM_043264050.1 mRNA upstream 561 11538949 ~ 11540984 (+) False mpv17l2
XM_043264027.1 mRNA upstream 2738 11536965 ~ 11538807 (+) True ifi30
XM_043264008.1 mRNA upstream 5649 11508712 ~ 11535896 (+) True pik3r2
XM_043264015.1 mRNA upstream 5649 11511300 ~ 11535896 (+) False pik3r2
XM_043252958.1 mRNA downstream 743 11581166 ~ 11585710 (+) True rab3aa
XM_043252946.1 mRNA downstream 5402 11585825 ~ 11587904 (+) True LOC122354667
XM_043224967.1 mRNA downstream 12728 11593151 ~ 11598650 (+) True agtr1a
XM_043224994.1 mRNA downstream 12728 11593151 ~ 11598650 (+) False agtr1a
XM_043224985.1 mRNA downstream 12731 11593154 ~ 11598650 (+) False agtr1a
TU16617 other upstream 35815 11502402 ~ 11505730 (+) False mast3a
TU16613 other upstream 41467 11496360 ~ 11500078 (+) False mast3a
TU16615 other upstream 42608 11496360 ~ 11498937 (+) False mast3a
TU16565 other upstream 200434 11339863 ~ 11341111 (+) False mrpl34
TU16555 other upstream 284781 11240126 ~ 11256764 (+) False kcnh2a
XR_006252734.1 other downstream 327650 11908073 ~ 11937590 (+) False pld1a
XR_006247874.1 other downstream 699488 12279911 ~ 12280014 (+) True LOC122328992
XR_006247873.1 other downstream 700167 12280590 ~ 12280659 (+) True LOC122328989
XR_006247863.1 other downstream 700949 12281372 ~ 12281504 (+) True LOC122328950
TU17183 other downstream 1043400 12623823 ~ 12626387 (+) True LOC122358236

Expression Profile