RNA id: XM_043264291.1


Basic Information

Item Value
RNA id XM_043264291.1
length 3580
RNA type mRNA
GC content 0.50
exon number 20
gene id tcf3a
representative False

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 22958986 ~ 22998516 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTAACCGTGCGTCGTCTCATTCCGCGCGTTAGTCTAGTACGGCGCAATTTACAGCAAAATCCCGCTCGCGTCGCGATAAAGTTAGATATACCGCCGCCCGCGTTATTTCGCAGCTTATCCGTGTTGAGCGTGTGGCAAATATCCAAGCAATCGCGTCACAAATCCAGACCTAGTTTTCTGGGCGTTTGAAATCGGACACCGCTATAACGTCTCCCCTCGGCGCGGAGGGATACGCTGTTGGGGCTGACAATGTGGACGGTGCTAAAATGTCTCCTCGGAAGATGAGATGTTACATTTGTAGCGCTCAAAAGAATTAGAATAGAACTTTGGGCAGAGTTACATTCGAGCGCGGTTACATTGTAACAACTCTCGGCGCGGACCGTTCGCGTTTCCCGGGAGCTCGGACGCGTTTTGCACCGTGAATTAGCGGGACCTGAGGCGCGGAGGGGGGGGGAAATTTTGTCCCccaacttttctgtttttcctccCGGGCTGAAGCGCGTTTCTCTCCCGCTGGATGCCGCACGCGTGACGCGAGGAAAGGATCCTAACCCCGTTTGAGCCGAGAGAGAGAACGAGCGAGACGCAGAGCGAGAGAAGCGGATCAGGAGCGCAGGATCAGGATGGCGACGGTGGGGACCGACATGGAGCTGAACGACCTGTTGGACTTCAGCGTTATGTTTCCTCATCCAGTGTCAAACGGGAAGAACCGAGGCCCTCCTATACCCAGCGGTCAGTTTGGTTTGGATGAAAGAAGTGGCTCCGGCTCTTGGGCTTCAGGAGAAGCGAACAGTCCAGCGTTTGGCGCTCGgCTGTACGGAGACGGCCCTCACTACCCCGAACACGACGGCATGTACAACCTAGAGATCGACGGGAAGTCTGAAAGAGGGTACCCCGTCACTCAGCCGCAGCTCTTGCCCGCTGATATTAACGATGGTCTTTCTCCTCCGGGAATGAAGGTCCCGTCTCAGTTCTACAGTCCTCACCGCCGGAGGGTCGCCGACTCCAGCATCGATCCACTGCCCAAGAAGATCCGGAAGGTTCCTTCTGGCCTGCCGTCGTCTGTGTCTTCGGTTTATCCCGGCTCCGCCGGAGAGGACTATACCCCGGACGGCAACGGATACCCTGGATCCAAACCCGGAAACCTTTATCCAGGCTCTTTCTGGCCGGATGGACTTCCTGATTGGGGACAGTCTGGTTATTCTCCCGTCATGAATAACTCTCCTCACATCGGTCAGCCGGCCCCGTTCCCCTCCATAAACACACAGAAGCGGCAGCCCTTGCCCCTGTCTCCTCAGAACTACGCTCTGCACGGGAGCGAGGTCCTACCCAGCAGCTTCCACCCGGCCTCGGCGGGATACGGCGTTCCCAGCCACACGCCGCCCATCAGCAGCTCCGACAGCATCATGGTCAGCAGAGCTGGAAACGCAGGCAGCTCCGGCGCCGAGATCGGGAAGGCGCTCGCTTCGatataTCCCTCTGACAATAACAGCAGCTACTCTCCCAGTCCTTCCACTCCCGTGGGATCTCCTTCCAACGTTGCTGCTTCCGCCTCTCAGTGGCCCAAAGGCTCCTCTCAGCCGGCTCCATCCCCCGGGTTTGAGCCCGGTCTGCAGGCGCTGACTAAGATGGATGACCGTCTGGGTGAAGCGCTGCACGTGTTGAGTCGTCATGCGGTGGGAGCAGACATGCACAGCTTACTGAGCGCCGCCGTCTCTGGACACCCAGCCGGAGCCGCGGCCCTGGGCTCCATCAGTCAGGCCTTCGGGCTCGCCAGCCGTCTCCCGGGCCTGATGTCCAATCACAGTGATGATGCAGCAGGTTTACCACAGTCCAGTGCTCTGCTGCAGGGACACCACGCCCCTCATCAGGCCCCGCCCACTTCTCAGTCCGACGCTTTTACCAgTCTTTCTCTGCCTCACTCTTCTCACTCATCCAGCTCGGATATAAAGCGGGAAGATAAGGAAGATGATGAGAACCTGTCCATTGCAGATAAATCAGAGGATGAGAAGAAAGACGGGAAAAGCCGCACGCGAACGAGCCTGTCGGAGGAGTGTCTGACGGTGGAGGAGAAGGAGCAGCGCGAGCGCGAGCGGCGCATGGCCAATAACGCTCGGGAGCGGGTTCGAGTGCGCGACATTAACGAGGCCTTCAGGGAGCTCGGACGCATGTGTCAGCTGCACCTGAAGAGCGACAAGGCTCAGACTAAACTCATCATCCTCCAGCAGGCCGTGCAGGTCATCCTGGGCCTGGAGAGACAGGTGCGAGAGCGTAACCTGAACCCGAAGGCAGCGTGTCtgaagaggagagaggaggagaaggtcACAGGAGATCCTCAGATGCTGTCCGGTCTGGGAGGAGACGGACACGGACACATGTAACGCTCAGATCCTGACATGAGGAAGCTCTCCGTCGACGTGGCCTTATCTTCCCGTTCTCGTTCCagagtccacacacacacacacacacacacacacacacacacactcacactcgtGATTTATATATGATAAACAGATGTGTTGAAGACTTGCATACACACAGTAACTTCCCGAGCTGCTCGTTCGGCTCGTGATCATGGACCATCGATGGAAACCAGCTTCTGCAGGCTCGGACCGGACCGGATTGGACCGGACCGTCCTGCTGTCTGACGCTGTGACGTCGATTTACCGTGTGCTGttatacagcacacacacccATGAGCCTTTGTATTCAACGCAAGGTCAAGCTCCGCTGCGGGAACAGATTCCTTTCTTTTGTAGTTCATGTATTCGagtttgactttcttttgtaCCGATTTGTGTTTATGATGTAGAAGAGAGAGATGTTCAGTTTTGAAGCGCAATGTTTGTGGTTCTGTTTGGGGATCGCCACTAATGCGTGAATCCCACAGAACCGGCCGTATTTCACCTCAGAAAGCAAGACATTACatgaaattcatttttaagGAAAATTAAGCCTGTTTTaatgggactttttttttttattataacatttgcCACAGAttctcattataataatatatataaatacatatatatatatatatatatatatatatatatataatgtacacacatactctaaagaaaaaaacatctgtgtAAATCATACATAAGGATATATAGGATCCTTTATGCTTATTTAAATACTGAATTAccgtttttatactgtattacagttaaaataagaATGTATAAGGATATggaaaaactcaaataaaactcGTGGATAAGTATGCAATGATCTTTTAAAACAGGCTTTATTTTCTTcagataaatgcatttattttaatttaatttttattttattttgaggtggTGAAATATgtaaacgtgttttttttttttttgtttgtttgttttatttttatttttaaggaaaatttagtttttttttttttttttttttttttttttatacaggaCGTTAGGATTTTTATGACCAACACATTCCCCCCAGAATTTCATCATTAACTCTTTATGCGGATTGAAATGCAAATCGTtgtatttacagtaattttactgtatttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaattaggtaaacgctta

Function

GO:

id name namespace
GO:0055002 striated muscle cell development biological_process
GO:0046983 protein dimerization activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU21569 lncRNA upstream 79521 22847913 ~ 22879465 (+) True G14589
TU21567 lncRNA upstream 79521 22860184 ~ 22879465 (+) False G14589
TU21556 lncRNA upstream 129441 22813266 ~ 22829545 (+) True LOC122328317
XR_006247781.1 lncRNA upstream 129494 22813415 ~ 22829492 (+) False LOC122328317
XR_006252487.1 lncRNA upstream 156513 22786721 ~ 22802473 (+) True LOC122357472
TU21584 lncRNA downstream 4688 23003204 ~ 23005138 (+) False LOC122324535
TU21587 lncRNA downstream 28264 23026780 ~ 23028239 (+) True G14605
TU21589 lncRNA downstream 30651 23029167 ~ 23029879 (+) True G14607
TU21593 lncRNA downstream 48117 23046633 ~ 23049972 (+) True G14611
TU21837 lncRNA downstream 159582 23158098 ~ 23179131 (+) True G14772
XM_043219179.1 mRNA upstream 12128 22938787 ~ 22946858 (+) True map2k2b
XM_043222610.1 mRNA upstream 21158 22926313 ~ 22937828 (+) True pias4b
XM_043223952.1 mRNA upstream 88014 22833068 ~ 22870972 (+) True LOC122328301
XM_043219140.1 mRNA upstream 174140 22780823 ~ 22784846 (+) True sf3a2
XM_043220650.1 mRNA upstream 185230 22770549 ~ 22773756 (+) True tpgs1
XM_043219049.1 mRNA downstream 4649 23003165 ~ 23005254 (+) True LOC122324535
XM_043219036.1 mRNA downstream 7381 23005897 ~ 23016480 (+) False mbd3a
XM_043219030.1 mRNA downstream 7411 23005927 ~ 23016480 (+) True mbd3a
XM_043220303.1 mRNA downstream 19841 23018357 ~ 23025395 (+) True LOC122325295
XM_043222658.1 mRNA downstream 251676 23250192 ~ 23260474 (+) True LOC122327352
TU21525 other upstream 263656 22691251 ~ 22695330 (+) True fcer1gl
unassigned_transcript_253 other upstream 1030167 21928747 ~ 21928819 (+) True trnam-cau_1
TU21370 other upstream 1097544 21860891 ~ 21861442 (+) True G14471
TU21151 other upstream 1242699 21715355 ~ 21716287 (+) False ccl20a.3
TU21079 other upstream 1476668 21481676 ~ 21482318 (+) False LOC122354659
TU21973 other downstream 546590 23545106 ~ 23547974 (+) True G14831
unassigned_transcript_256 other downstream 738535 23737051 ~ 23737122 (+) True trnaw-cca_1
XR_006247041.1 other downstream 937405 23935921 ~ 23938943 (+) True LOC122323670
TU22269 other downstream 1085322 24083838 ~ 24088441 (+) False LOC122327442
TU22338 other downstream 1494922 24493438 ~ 24499685 (+) True G15065

Expression Profile