RNA id: XM_043264338.1


Basic Information

Item Value
RNA id XM_043264338.1
length 4580
RNA type mRNA
GC content 0.52
exon number 25
gene id lamc1
representative True

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 16625845 ~ 16670329 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCGGTCCATCAAAGCATCCTTCAGGCGGAAGTAGACGTAGGGATTTTTTTTGGAAGTACTTTGACTTGCGCACTAGCTGCCAGGGTGTAGTCGGATATAGTTCCTTTTctccaaaactttttttttccatggcgGTGGTTACAAAGCAGTAATAAAGTGAAGGTTTGCAAGAGAGAAGTCGCGGGGAGATTAAGCCACAACTATCGCTTTTTGGAGGTGAAGCGACTACCACCATTTTCCGCatgagtttatttataaaaccgCAAACTCGGTAGCTGGCGAGTTACCGCAAACTTTTTTAAAGACTGCGAGGATTTAAGGGATCGAGACAGTGAGGGTAGCTACTTGAGGTCGCATAAACAAAAGGACACAATGTCGTTTTTTAGCTGTTTGTTATTATGGACTTTGTGGGCAGCGTGCAGTCACGGAGCGATGGATGAATGTATAGACGAGTCCAATCGGCCTCAGCGCTGCATGCCAGAGTTTGTTAACGCCGCTTTCAATGTAACCGTAGTGGCCACCAACACTTGCGGCTCGCCGCCTGAAGAATACTGTGTACAGACCGGGGTAACGGGAGTCACTAAATCATGCCACATTTGCGACGCCGGAGACCCCAGGCACCACCACGGCGCTGTTTATCTCACCGATTACAACAACCAAGCGGATACCACCTGGTGGCAAAGTCAGACTATGTTAGCGGGCATCCAGTACCCAAACTCCATCAACCTGACTCTTCACCTGGGCAAAGCTTTCGACATCACTTATGTGCGTCTGAAGTTTCACACGAGCCGTCCTGAGAGCTTTGCCATCTACAAGCGCACTAGTGAAGATGGGCCCTGGACCCCCTACCAGTACTACAGCGGCTCCTGCGAGAAGACCTACAGCAAGATCAACCGTGGCTTCATCCGCACTGGTGAAGACGAGCAGCAGGCTCTTTGCACAGATGAGTTTAGCGACATCTCACCGCTCACCGGAGGAAACGTGGCCTTCTCCACGCTCGAGGGCCGACCCAGCGCATATAACTTTGACAACAGCCCAGTGCTGCAGGATTGGGTGACTGCCACGGACATCAGAGTGACCCTGAACAGATTGAACACTTTCGGAGATGAAGTTTTCAACGATCCCAAAGTTCTCAAATCCTACTACTACGCTATCTCTGACTTCGCTGTGGGAGGAAGGTGCAAGTGTAACGGCCATGCCAGCGAGTGTGTGAAGAACGAGCGCAGCAAAATGGTGTGTAACTGCAAACATAACACAGAGGGACCAGATTGCAACGTGTGCAAGCCTTTCTACAATGACCGTCCCTGGAGGAGAGCCACCGCCGACAACCCCAACGAGTGTCTGCCTTGTAAGTGCAATGGAAAGAGCGGCGAATGTTACTTCGATCCTGAGCTGTATCGTGCCACTGGTCACGGAGGTCACTGCCGCAACTGTGCAGACAATACAGATGGGCCGAACTGTGAGCGATGCCTGGATAACTACTTCAGAGACCCCTCCGGCCAGCGCTGTCACTCCTGCAGCTGCAACCCTGTTGGTTCTCTCAGTACCCAGTGTGACAACACTGGCAGATGTAGCTGTAAGCCAGGAGTGATGGGAGATAAGTGTGACAGATGCCAGCCTGGGTACCACACACTGACTGCTGCAGGCTGCAGACCCTGCTCTTGCAATCCAGCCGGAAGCACCCAGGAGTGTGATGTCCAGACCGGACGCTGCCAGTGCAAGGAAAATGTGGATGGATTCAACTGTGACAGGTGTAAACTGGGCTTCTTTAATCTGGACCCCCAGAATCCTCAGGGATGTACTCCATGCTTCTGCTTCCAGCATTCCACTGTGTGCGAAAGTGCTGATGGCTACCACATACACAAAATCACCTCCACCTTCGACAGGGATGAAGAGGGCTGGAAGGGACAGCAGAGAGATGGCTCTAGCGTTCCAGTGCAGTGGTCGCCCACCACTCAAGAGATCTCACTCATCTCAGAAGACTACTTCCCCATCTATTTTGTGGCTACAGAGAAATTTCTTGGTAATCAGCTGCTGAGCTATGGTCAGAACCTCACGTTGAACTTCAGGATTCAGAGACATGATGCTCGGCTTTCAGCGGAGGACATCGTGCTGGAAGGGGCCGGGCATCGCGTCGCTGTCCCACTTATTGCCCAGGGCAATTCCTACCCAGGAGAGGAGACACAAACCTTTGTGTTTAGACTCCATGACACGACTGACTATCCTTGGAGACCCACCATGAAACACGCCGACTTCCAGAAACTTCTGTACAATCTGACTTCGATTATGATTCGTGGAACCTACAGTTCAAGAAGTGCTGGTTATTTAGACAACGTGTCCCTGGTGACTGCCCGCCGTGGCCCTGGAACTCCGGCTCGTTGGGTTGAGAAGTGTACGTGTCCTCAGGGTTACTTGGGGCAGCATTGTGAGCAGTGCGATCTGGGATATAGGAGAAGCCAACCTCAGCTGGGCCGCTTTAGCAGTTGCGAGCCCTGCAACTGCAACGGACACAGCGACACTTGCGACCCTGTGACAGGAATGTGTAACTGCCAGCACAACACCGCCGGCATGAGCTGTGAGAGGTGTAAAGACGGGTTCTATGGTGACTCTACAGAGGGCACATCTTCAGACTGTAAACCCTGCCCCTGCCCCGCCGGTGCCACGTGTGCCGTGGTGCCCAAGACCAAAGAGGTGGTCTGTACAAACTGCCCAACTGGAACAACAGGTAAGAGGTGTGAACTATGTGATGATGGCTTCTTCGGGGACCCTCTTGGTGAAAACGGTCCAGTCAGGGCATGCCGTGCCTGCAGCTGTAATAACAACATCGACCCCAATGCTGTGGGCAACTGTAACCGAGAGACGGGCGAGTGCCTCAAGTGCATTTACAACACCGCCGGCAGCTTCTGCGATCGTTGCAAAGAGGGTTTCTACGGCGATGCACGTGCCGCAAATGTAGCTGACAAATGCAAACCATGCTCGTGCTCTCCGTACGGGACAGTGGACAGGAAGACAACTTGCTCCCAGGTGACGGGGCAGTGCCAGTGTCTTCCCCACATCATTAACAGAGACTGCAGTGCGTGTGAGCCCGGTTTCTACAACCTACAGAGCGGCAAAGGCTGTGAACgATGCAACTGCAACGCTATTGGCTCCACAAACGGCCAGTGTGATATCGTTAGCGGCCAATGCGAGTGTCAGCCTGGGGTCACAGGTCAACACTGCGAGCGCTGTGAGGTCAACTCCTTTGGATTCAGTTTGTCGGGTTGCAAACCTTGTGACTGTGACCCGGAAGGCTCGGAGTCTGCTCAGTGCAAGGAAGACGGGCGTTGTCAATGTCTCCCAGGTTTTGTGGGAGCTCGCTGTGACATGTGTGAGGAGAACTACTTCTACAATCGCTCCACACCAGGATGCCAGCAGTGTCCCAACTGCTACAGTCTGGTCAGGGACAAGgTGAACCAGCAGAGACAAAAGCTTCATGACCTACAGAATTTGATTGAAAATCTGGACAACACTGAGAATACAGTGAGTGACAAGGCCTTCGAGGACAGACTGAAGGAGGCAGAGAAAACAATAATGGACTTGCTGCAAGAGGCTCAGGCTAGCAAAGAAGTGGATAAAGGCCTTTTGGACCGTCTAAACAACATCAACAAGACCCTGAACAACCAGTGGAACCGACTGCAGAACATCAAGAACACCGTGGACAACACAGGAACGCAGGCAGATCGAGCACGTAACCGAGTCCGTGATGCAGAGAACCTGATCAGCACTGCTAGAGAGGAGCTGGATAAAGCCAAGGAGGCTATCAGTAAAGTGGACATTAAAATACCCACAACCTCTGGAGATCCAAACAATATGACACTTCTGGCAGAGGAAGCCCGCAAACTGTCCGAAAAACATAAAGCAGATGCAGATCAGATTGAAAGGATTGCGAAGGACGCCAATGACACATCCACTAAAGCCTATAATATGCTAAAGAAGGCGCTTGACGGCGAGAACAAAACAAGCAGCGACATTGATGAACTTAACAGGAAGTATGTTGAAGCCAAGGACCTGGCCAAGAACCTGGAGAAACAGGCTGCTAAAGTACATGCCGAAGCAGAAGAGGCAGGAAACAAAGCTCTGAAGATCTACGCTAACCTGACCAGCCTGCCCCCAATCGACACTAAAACATTAGAGGATGAGGCCAATAAGATAAAAAAGGAGGCGTCAGACCTGGACAAACTGATAGACAAGACTGAGAAGGAGTACAACGATCTGAGAGAGGACTTGAGGGGCAAAGAGACAGAAGTCCGCAAACTACTGGAAAAAGGAAAGACTGAGCAACAGacgGCTGATCAGTTGTTGGCACGTGCGGACGCAGCAAAGGCTTTGGCTGAAGAGGCAGCGTAAAAAGGAAAATCTACTTTCCAAGAGGCACAAGACATACTGAACAACCTCAGAgACTTTGACAAGAGAGTGAATGACAACAAAACTGCTGCTGAGGATGCCATGAGGCGAATCCCAGAAATCAATGCGACAATCAATGAAGCCAATGAGAAGACGCGGCGGGCCGAGGCAGCTTTAGGCAACGCCGCTTCTGATGC

Function

GO:

id name namespace
GO:0050908 detection of light stimulus involved in visual perception biological_process
GO:0007519 skeletal muscle tissue development biological_process
GO:0031290 retinal ganglion cell axon guidance biological_process
GO:0048570 notochord morphogenesis biological_process
GO:0007634 optokinetic behavior biological_process
GO:0007155 cell adhesion biological_process
GO:0005604 basement membrane cellular_component

KEGG:

id description
K05635 LAMC1; laminin, gamma 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU18588 lncRNA upstream 169313 16450153 ~ 16456532 (+) False LOC122323293
TU18524 lncRNA upstream 360925 16263774 ~ 16264920 (+) True G12530
TU18505 lncRNA upstream 590937 16032772 ~ 16034908 (+) True LOC122359940
XR_006252739.1 lncRNA upstream 591219 16032757 ~ 16034626 (+) False LOC122359940
TU18481 lncRNA upstream 747441 15878134 ~ 15878404 (+) True G12491
TU18628 lncRNA downstream 20597 16690926 ~ 16693619 (+) True G12607
TU18741 lncRNA downstream 61408 16731737 ~ 16776351 (+) False LOC122361622
TU18738 lncRNA downstream 62892 16733221 ~ 16776351 (+) False LOC122361622
TU18740 lncRNA downstream 64476 16734805 ~ 16776351 (+) False LOC122361622
TU18737 lncRNA downstream 66045 16736374 ~ 16776351 (+) False LOC122361622
XM_043219821.1 mRNA upstream 2812 16613776 ~ 16623033 (+) True dhx9
XM_043259164.1 mRNA upstream 13379 16561384 ~ 16612466 (+) True rasal2
XM_043259179.1 mRNA upstream 13379 16561384 ~ 16612466 (+) False rasal2
XM_043259172.1 mRNA upstream 13379 16561384 ~ 16612466 (+) False rasal2
XM_043259186.1 mRNA upstream 13379 16561384 ~ 16612466 (+) False rasal2
XM_043218730.1 mRNA downstream 6810 16677139 ~ 16689372 (+) True lamc2
XM_043258692.1 mRNA downstream 30748 16701077 ~ 16718102 (+) True smg7
XM_043258700.1 mRNA downstream 30748 16701077 ~ 16718102 (+) False smg7
XM_043258710.1 mRNA downstream 30749 16701078 ~ 16718102 (+) False smg7
XM_043262423.1 mRNA downstream 51799 16722128 ~ 16723558 (+) True LOC122361612
TU18526 other upstream 357048 16267043 ~ 16268797 (+) True G12531
XR_006252462.1 other upstream 1842868 14776322 ~ 14782977 (+) False ackr4a
XR_006252465.1 other upstream 1843141 14776322 ~ 14782704 (+) False ackr4a
TU17566 other upstream 2446230 14175364 ~ 14179615 (+) True G11854
TU18915 other downstream 361990 17032319 ~ 17037297 (+) False golim4b
XR_006252905.1 other downstream 691916 17362245 ~ 17367861 (+) False sppl2
TU19352 other downstream 896512 17566841 ~ 17567916 (+) True G13114
TU19349 other downstream 936923 17607252 ~ 17608092 (+) True G13111
XR_006247303.1 other downstream 1109010 17779339 ~ 17782364 (+) False LOC122325453

Expression Profile