RNA id: XM_043264350.1


Basic Information

Item Value
RNA id XM_043264350.1
length 5897
RNA type mRNA
GC content 0.48
exon number 11
gene id kcnn1a
representative True

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 11379243 ~ 11405700 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CGTGAGTAATTTTGTAAACGCTTGGCCAACCTGATTCACAGATGATACCTGAATGATTCGCTTGTTTTCATCCTCGTCCGTTAAAACGTGATGATGCAAAGCATATAAATACGCTCGTGTGATATACCCATTGCTTAACCGTTGCCCTCCGCTTAACACTCGGTTACTCGCAGGTCTGGACGCACGTTACGCTAGCTATAACAACAGCTGACATAAAGCAACCTTTCAAAGAGGTGCACCTGTCCCCTGGAGTGTTTGACGCGCGCTCTTTTTAACGTCGCGGTTCGGCGGCGCGGGCATGAAAAAGTCGATCCCGCCAAGACGTCCGTGTTTTCGCCGCGCGCGTGACCTTGCTAATACCCCATTCGCATCTCGGGTTTAATCTTATCAACTGTAAACATAAAGCGCTTTTCGCACGAGGGCGGCGTTCATCTCGGCGATGACGTCACGAGGCAGGTCTCGCTCGAGCCCACCAATGAGACGAGGCGGCTCGGTTCTTTTGGGGCACATCGCAATGAATGGGTGTCGGTGCTTTACAAGGCAAAGGAGCGACCACAACAAGACGCGGATATTGAGGGGATGCGGCATCGGCACGCGGGAGCTGTCCACCAGCTGCAGCACAGCAACGACGCGGACGCTCGTGACGGTCAGAAGGAAGCACCTCGTCCAGTCGCCCCGCTCTTTAGTCTGCCGCCCCCACCGCCATCGATAAAGGAGCGAACCACCTCCTCGCATCACAGCCGAAATGCACAGTCCTGTCCGGACCGCGGCGCCAGGAACGGCGAGTGCCCGCCTTTGACCGGCCACGGTGACCGTCAGCCGCCTCCGTTCGCAGGGGCCTCGTCTGCCTCTCGGTGTCGTTCGGAGGGGCTCTCGCCGAGCAGCCATTCTCCTCAGCAGCGCGGATCTTCCGTTTCCCCGCAGCCCTCCCCATCCGAACTGCCGCCGCCGCCTCTGCCTTCGCGCATTTCTAATACGCGGGATACGCGCCAAAAGATCGCTAATTACAAACAAGACATCGTACAGCGTCGCGTCGGGGAGGGGGGGCGTCGAGACCAAAACCAGTTGCTGCAGCAACCCTCTTATAATCAACAAAGGGACCCCTCCTTTGAGCCACTCTTGCCAAACTCCGGTCAAGGACAGATAAATGCACGCGAGGAAGCCGAGAAGGAGAGGCAATTAATTGAGCCTCAGGCTCAGTTACTGTTGGGCAGCAGCTTGCCCGTCAACTACTGCATCGGCGGATCGGGGCAGGTGTGCAGAAACAAGCAGGCGCCGCTGTTGCAGCATCAGCATCCGCGGAGTGACAGAGAcagcagcagcggcggcggcggcggcagcgGCAGATACCAGGAGGGGAAAAGCGCACTCTGTCAGCCGTATCGATGCGAGCGAGCGCTGGAGAGGAACTCGTCCGTGTCGAGCAGTGAAAACAGCAGCCCCCCGTACGGCTCCAGCAGTCAACTGTGGCCAGAGCCCCACGACAAGGAGGACAGGAAAAATCGCGCAGGCAAACACAAGGCACATGCTGAGCGAACAAAGCTGAGCCATGCTGGATCCAAGCCCTCCCTCTCCGAGAGCAGTCACTCACTCCCTCAGATAGCCATGAACAGCTGCAAGTACAATGGAGGAGTGGTAAGACCACTGGGCAGCCTGGCGGCGTCACGACGCAACCTAGCAGAGCATGACTCTGAGACCCAGCCACTCCAGACTCTTCACAGCTCCGGCCTGGAAGTGGTCGTCTCTAAGGGTGGCGGCGAGGACCCCAGCAAGGCGTCCAATGAGAGCCTGGTCCGAGAGAGTGGCAACgcaccacagaaaaaaaataaagatattggCTACAAGTTGGGCCACAGGAGGGCACTTTTTGAGAAGCGCAAGCGGCTTAGTGACTATGCCCTCATATTCGGTATGTTTGGGATCGTTGTCATGGTAACAGAGACTGAACTGTCCTGGGGGGTTTACACTAAGGAATCTTCATATTCATTTGCACTGAAATGCCTTATCAGCCTTTCCACTGTTATTTTGCTTGGTCTTATAATAATGTACCACGCTCGGGAAATACAGCTGTTCATGGTGGACAATGGGGCGGATGACTGGAGGATAGCCATGACGTATGAGCGCATCTTCTTCATTGTCCTGGAGCTGCTGGTGTGTGCCATTCACCCAATCCCGGGCCAGTACGTGTTCACGTGGACGGCCCGGCTGGCTTTCACCTACGTGCCCTCCGTGGCCGACGCCGACGTAGACATCATCCTTTCCATCCCCATGTTCCTCCGCCTCTACCTGATTGGCCGGGTCATGCTCCTTCACAGCAAGCTCTTCACCGACGCATCCTCGCGCAGTATAGGTGCCCTCAACAAGATCAACTTCAACACGCGCTTCGTCATGAAGACCCTCATGACCATCTGCCCCGGCACCGTGCTGCTGGTCTTCAGCATCTCCTCGTGGATCATCGCGGCCTGGACCGTCCGGGTCTGTGAGAGGGATGCCATGTATCATGACAAACAGGAAGTCACTAGTAACTTTCTTGGGGCTATGTGGCTAATTTCCATAACTTTCCTATCAATTGGCTATGGAGATATGGTCCCTCATACATACTGTGGGAAAGGGGTCTGTCTGCTCACAGGAATCATGGGGGCTGGCTGCACTGCACTTGTAGTTGCAGTGGTAGCCAGAAAGTTAGAATTGACAAAAGCCGAGAAACACGTCCACAATTTCATGATGGACACCCAACTTTGTAAACGAGTAAAGAACACAGCTGCCAATGTACTCAGGGAAACATGGCTCATCTACAAACACACCAAGTTAGTGAAGAAGATAGATCATGCCAAAGTGCGCAAACATCAGCGCAAGTTCTTGCAGGCCATTCACCAAGCTCAGAAGCTCCGCAGTGTGAAAATGGAGCAGAGGAAACTCAATGACCAGGCCAACACTTTGGTGGACTTGGCGAAGACTCAGAATGTGATGTACGACCTGGTGTCAGAGCTGCAGGAACGCAGTGAGGAGCTGGACAAGCGTATTGGCACGTTGGAGGACAAGCTGGACGCAGTCACCGGCAGCCTGCAGGCTCTGCCCTGTCTGATCTCCCAAGCCATAACTCAGCAGCAACAGGACCTCCTGGACGGCTTCGTGCACCGCTTCTGCCCTGCTTCGCTGGGCTCAGAACGCTCCTGGACCCCATCCAGACGGCGGCGTTCGCCCTCCACCGCCCCGCACACTTCCTCCGACAGCGGCTAACGTGGGCCCGGACCTGCTCGCCGCTTCCAAAGGTCTCAGACTTATTCACGTAAGATGATCAAGCCGAGATTGAGGACTCGTGTTAATAAGTAGAGAAGAGTTATCAAAATAGTAGATATATGGTTTATGTTTAGCCATTGTATGGCTGTTCAAGTTAGCTTTTTTGTAAAGCCCTCATATATTTACAAGACTGAGTTCAGGAAGCTGGAGTGAGTCCAGGAAACTGGTCCGTCAAACTGCGAGATCACGGGGTCCGCGGGAAGGTGGGCCCGAGCGATGCCTGCCAGAGTGAACCAACGCAGACCATAAAGGAGCGACGCACCCACATAGAAGCGATTCACTGGTCCTGTAAGACATCTGTGCCAGGATGAGCACCGAGAACGCGTCTGGGTGCTCTGCGAGCGCTTCAGCATTCGGCTGGAGACGCAGGAGCACATGACCTTACTACTGAGTAGAATAATGCAGGAATGCCAACCTTAAGGATTCAGTTCCCTTGCTCCTTTAAGGGAAATTGGGTGCAACTAACCTTTTTTAGTTACATATtggcatgttatttttttcagtgcctGAATGTATAGATTGTGGAGGGTTGTCCATTTACAAAATTTTGGAGCGAGTTTTTGTACAATGTTAACACGAGCATTGCATTCCTTTTTCAGATACATTCCTCTTGAAGACATTTAACTCGTCTGTCTTAACAAAAACCATTAACTCTGTCGCAGTCTTCTCTTATTTTCCAAAGCCTCTCAATACTTCCACCAGTTAGGCAAAGAAGgtaggaaagaaagaaaatataggaaagaagaaataaaagaaggCATAGTTTCTACTCAAACTGgtaacactttcattttaacGAAATCTGAGCTTCCAGAAGTCTTCACATTACCGAGAGGCTGCGTTTTTGAATCTGAAATGACAGCACAGAGTGCTAAATGCTGTGGTAGGCACAAATGTATGACAGGACTAAGATTTAAACCTTGCATGTTTCAGTGCAATTGTGACGAATGGATTATGGATGGTTTTTCaaacgtatgtgtgtgtgctctttattttttgttttatttcatttattttttacacagagATTCCTTTTTAAAACGTTGGATAGTATTTTTAGAGTTGCAAATATAGCGGTGCAGTAATGTGGTAATGTATGTTTAATGCATTCCTTGTTCTACCTATAAATGAATTCCTCGACCAAGAGATTGACGAATCAGTGAAGAGTAGGAGTAATACATAACAAATCATTCTGTAATCACGAGAAGACCTTCTCCGAGAGAATATATCTAATGGGGATGGAGATGGAGATGCTTATGGAAGACATTGTGGCTCACATTTGCACTTTTCAGAACATACCGTTAAGGCAGCTTAGAGCTCAAATCTGTCTCTCCTGTTCACTTGTATTTTTCGGACATCTATGGTTTTTAATAATCACATAACTTTAAAGCAACTGACAATGTTATGTGTTTGATGGTGTAATTGTCACAGATTTAAAGCTAATGGCTACGACCcaagttttatttatagttttatttttattaatttgactttagatttaaaaaaaaaacctagatgAGATCAGGCAAAATATGGGATAGCAGTTATTTGTGcttgatttaaaatttataaatgatttgatttttttgccttttattttgcAAGACATTGGATCCTTAACCAAAGCCTATACATTTATCAACTTATCAAGCAAATTAAACTGCACTCATTTCGTGTGAGATCGTAGCCAAATTCCCCcccaaaacacttttaataatgcatgtttgcttTTCTGATTTGCAAGTAAagcatttgttaatttattattaaatgagaaaaagattTCCATAATTTGGGCTTGATCACAACTCCTATCCAAGTTGTTTTAGTCTTGTCAAAACTGTGTTTAGGTCTTATGTATTTCCAGTCCTCTGTTCTTGTGTACAAACGATGCCTAAAATTAGCAACCTTGCCAAACAACAACtccatttaaacttaaaaaaatagagAATTCTCACAGCTTTCATTGTTGATATATACTTGACACTTTTAgcacattttgataaaacagaTCAAAGACGAACTGAGAAAGCCGGTCGTAACATTCAATTCAACATCCTAATGTAGACAAAAATAGAAGGACAGGCCGCTTTACTATTCAAGCTGCTGTTGATGACCAAAATCAAGTGCAATTTAGATCCTGGTTAAAAATAATTGGATGTACAATTGCATGGTTTTAACAACATGACCATGACCCTTGTTCATGCCTTTCTCTCGCTTTCACTGTCAACACAGTCTAAATGTTGTAATGTGCCAATTATAATGTAAGACTCAGATGCCTTCTGATGTCAAACTGCATACACGAGTAGATGGGACACCAAATCACTAGAACGTATTTTATTGGActacatgattttattttctttcatatttttttcctaattGCCTTTCTTTGTGAAATACCTGTGAATGATCAAACAGAGAGATGAACTTGCATTTTGTATCCTCCCAGGTTGACTGTACATAAAGGCATGGGTTATCATGGTCTCGTATGTTGAGATCctcttattttgtttacatagagATAGCCCAAGAAGCTACGGTGTGGACAAAATCTGCCCATGTTTCAgataataaatatcaaattctTGAGAATA

Function

GO:

id name namespace
GO:0006813 potassium ion transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005516 calmodulin binding molecular_function
GO:0016286 small conductance calcium-activated potassium channel activity molecular_function

KEGG:

id description
K04942 KCNN1, KCA2.1; potassium intermediate/small conductance calcium-activated channel subfamily N member 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU16707 lncRNA downstream 39646 11335731 ~ 11339597 (-) False trnau1apb
TU16732 lncRNA upstream 16991 11422670 ~ 11423431 (-) True G11263
XR_006247844.1 lncRNA upstream 34323 11440002 ~ 11440899 (-) True LOC122328878
TU16757 lncRNA upstream 42139 11447818 ~ 11448594 (-) False crsp7
TU16760 lncRNA upstream 48579 11454258 ~ 11455403 (-) True G11280
TU16761 lncRNA upstream 50647 11456326 ~ 11456854 (-) True G11281
XM_043262679.1 mRNA downstream 1364 11367570 ~ 11377879 (-) True zgc:154006
XM_043219393.1 mRNA downstream 22843 11353433 ~ 11356400 (-) True plvapa
XM_043219372.1 mRNA downstream 28579 11341388 ~ 11350664 (-) True ano8a
XM_043219381.1 mRNA downstream 28580 11341388 ~ 11350663 (-) False ano8a
XM_043219412.1 mRNA downstream 40771 11335718 ~ 11338472 (-) False trnau1apb
XM_043253728.1 mRNA upstream 8627 11414306 ~ 11414845 (-) True insl3
XM_043222048.1 mRNA upstream 12263 11417942 ~ 11420734 (-) True si:rp71-39b20.4
XM_043220314.1 mRNA upstream 35311 11440990 ~ 11445110 (-) True cnn2
XM_043223724.1 mRNA upstream 41410 11447089 ~ 11453203 (-) True crsp7
XM_043262689.1 mRNA upstream 52772 11458451 ~ 11467496 (-) True crtc1a
TU16716 other downstream 39646 11335731 ~ 11339597 (-) False trnau1apb
TU16480 other downstream 517689 10767974 ~ 10861554 (-) False LOC122359216
TU16500 other downstream 575955 10800716 ~ 10803288 (-) True G11105
TU16478 other downstream 595292 10769515 ~ 10783951 (-) False LOC122359216
TU16485 other downstream 614352 10758028 ~ 10764891 (-) True G11102
TU16731 other upstream 36739 11442418 ~ 11445113 (-) False cnn2
TU16759 other upstream 43079 11448758 ~ 11449423 (-) False crsp7
TU16758 other upstream 43856 11449535 ~ 11452920 (-) False crsp7
TU16802 other upstream 170712 11576391 ~ 11577516 (-) True G11317
TU17467 other upstream 2148173 13553852 ~ 13558004 (-) False LOC122328470

Expression Profile