RNA id: XM_043264471.1


Basic Information

Item Value
RNA id XM_043264471.1
length 5455
RNA type mRNA
GC content 0.46
exon number 18
gene id fyco1b
representative False

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 24964026 ~ 24978745 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CAACCAAACTTGATGTGCTCCGAAAGACGCTGCTGATTGGATTACGTTACTGTCAGTCAATGTTAGTACCGCCCCTGTAATGGCAGCAGGGAGAGTTGTTTCTACTGTAAATAATCGATGAGGAAGATCTCCTTTCTGTATTACGCACAATGTTGACTTTATGAATCATTTACACTAACATATTCAGCCTACCATGAGTACAGTGGGAGAAAATCAGCTGCAGAGAATAATCAGAGATCTGCACGATGCAGTTTCTGAGTTGAGCAAAGAACATTGTGAGACTGGCGAGCCCATCACTGATGACAGCTCCAGCCTTCACAAGTTCTGCTATAAACTGGAGTACCTACTGCAGTTTGACCAGAAGGAGAGGACCACATTTCTGGGCAGCAGGAAAGACTACTGGGACTATTTCTGTGACTGCTTGGCAAAGATTAAAGGAGCTAATGACGGCATTCGCTTTGTCAAATCAATCCCCGAGCTGAAGACGTCATTAGGGAAAGGACGGGCTTTTATTCGCTACTGTCTGGTGCACCAAAGGCTGGCAGACACTCTTCAGCAGTGTCTTATGAACTACAAAACAACATGTGAGTGGTATTATGAACGCAGCCCCTTCCTGAAATCCCATCTGAACATTGATATCATCAACCACCTGTATGAACTCAATGAGGTTCAGTTTGATGTAGCATCCCGAGGTCACGACCTTGACTCTGACTGGCCCACTTTTGCAAGGAAGACTCTAGGATCAGCTATCTCACCCGCCCATGCGTGGAAACCACCAAGTCGCTGCTCTAGTGTCAACAGTCTGGTTAGCAGCTATTCACAGCAAGCTCAAGAGTTTCTTCCAGGCCCAGATTTTGGCTCTAGTCTTCTAGGTGATCTTGGGGAATTAGGTGAGTTGTCCTGTAGTGCTTCTGAGGACTTGCGCATTGAGCTTGACCAGTCAGAGTTGAGACAACAAGAGCTCCAAGAAAAGATCAGGCAACTCACCATTGAAGCAACTGATCTGAAGTCCATGGTCAAAGACCTACAGGGGCAGCTCTTGGTTCAAGGTCCTAatcaagagaaagaaaaagataaagagGTGGTGAGAGCTGTTAAAGAGTGCACAGATCACCTCCATACCACCACAGAGGGACTGGAGGCTATACGGACATCAGAACGCAACCTAGAAGCCAAACTGAGCATTGCAGAGAACAGAAACATGGAGCTGCTAGCAAAACTCGATGGAGCTCTGAGCGAAAAAGGACAACAGGCCGCCAATTACTGCGACTCTGCCTGGAAGATCCAGGAGCTCCTGACCAAGCTAAAAGAGGCAGAGGAAGAGAGGATTGAGTGTAAACGAGAAAGCGAAGATCGGACGAGACTAGCTGAGCAACTTTCCCAGGAGCTGAAGCTTCAAGAAGTTAAACTAAAGGAGATGGAAAACAAACTGGACACTAGCAAAATGTCTGCCGACAAAGAACGAACAACTGCAATGCAGCAGGCTGATGAGCTGCAGATGACCATCAACCGTCTTCAAGGCGCACTTTCTCTGAAAGAGCGGGAAACGGGGAACCTCCGGACTCAGCTGCAGGACATGCAGAGAGCACTGGAGGCCAAGGAAGGTCAACTGGAGGAGCACAAGAAAAAGATAGAAGAGGAGCTACAACATAAAAGCACTCTTGAAGACCAACTAAATACAAAGGTTAGTGAGTTGTCCTCCGTTGCCCAAAAGATCCGGCAACTGGAGAATCTCAACCAGCAGTTGACCTCGGAGAGTCAGAGTTTACAAACGCAAGCCAAGAAACTGGAAGAGTACAAGAACCAGTGCACAAGTTTAATGGAGATCAATGCCAAGCTGATCCAAACGGTGAAGAGAAATGAAGAGAGCAGCAAGGAACTGGTGCAGGCCAAGAACGCTCTGGAGAGAGAACTGATTACCACACGGGCCTCTGAGAATCAACTGAGAACCAGATTAGAGTCAGCTGGACTGACAGTGGAGAACCAAAATCTTGAGGAGTGCATGCTGAATGGCCAGGAAACCGAAATCAAACAACTTGGAGAGAGTAGTATATTAAGCCTGGAAGAACTAAATGAAGTGACTTCTAGTGTCATTCGGGAGATTAATGAATCTTCAAGAACTGACAATGGAGAATCTACTTCTAGGTTGGCTCTGGCTGAGGCCCAGCTTGAACTCAACATGAAGGAGGTTTCCAGACTTCAAGAAGAGGTCATGGAGCTCCGGGCGCAGCTATTGGTGAGTTCAGAGGAGAAAATAAAGATCCAGGCTCTGCAGGAAGTGACAGAAGCTTCCAGAGAAGATCTCAGGGCTCAGACGGAGCAACTAAAGTCACAGGTGGAGGAGCTAAACCGTAGGCATGTGGAGGAACTGCTGCgttgcagagaaagagaggatgcTCTGGTAAAAGAGAGGGATATGGAGGCCAATGTGCGGGTGGAAATCCAAACGAGCCTGACAGCTGTGAGGGAAGAGCTTCACTTGTTGAAGACGCAGAACAGCACGCTTGCGCTTGAGAACGGAGAGGCCCGTGAGGCCTTACACCGGGCCAACACTGAGACAGCAGAGCTTGGAGTTCACGTTTGCATGCTGACGGGACAGAACGAGGAGGCCCATTTGCGATGGGAAGAGCTTTCTACCAAACTGCAGGAGCTACAAGTGGAGGCGCAGGAGGAGGTGGAAACTTTGAGTGAGTCGATGGAGGTCTTGAGAACAGATAATGCAAGACTCCAAGAGCAGCTAAAGCAGACTGAAGGACTCCCGGGAACCATGCAGACATTACAGGAGAGACTTGAACAGGTGGAAGAAGAAGCCAAAAGTGTCAAAGAGGTCCGACAAAGGGAAGTTGACACACTGAGGTGCCAGTTGAGTGATGAAGCTGAGCACCATCAAAATCATGTGCAGGGTCTGAATGAGGAGCTGGATGAGTTGAGAAAGAGGCTGGAGAATGAAGTCAAGAAAGTCTCATGTCTTGAGTCCAAAGTTTTAGAGCTTGAgtcTGCCAGCAGCGATTACAGTGAAGTGATCGAAAAGAAAAATGCCCTCATTGGTGATTTTGAAACCGTAATTAATCAGAAAGAGGAACAGATAAGAAGCCTCAGAGTGGACTTAACAAGAGCTGAGGAGGAACTGGCTCATACTCAGCAGTCTTGTAATGAACTGGGTGTAAACTTAAGCAGAAGTGCGATGGAGAAGCAAGCCATTGAACTGAAGATGTCTGCTGAGATAGATGACCTTTATCGTACCAAAAAGAATCTGGAGGAGAGGCTCATTGAGCTCATAAGGGACAAAGATGCTTTATGGCAGAAGTCTGACGCACTGGAGTTTGAACAGAAACGCAGGGCTGaggaacagacagacagagatgtcACATACTGTCTGAGCTGCCGCAACCACTTCACCTGGATGCTGCGCAAACATAGCTGCAGGTTCTGTGGGCGCCCGTTTTGTTACTACTGTCTTGTTCATGATGCAAGCGTCCACCAGGGAAGCAGCAACATGCGCTGTTGTAAGGACTGCTTTAACCAGCGCAGTTCCGGACACGAGGACCCTGGCAGTCCTTTACGGTCTACCCACAGTCCGGTATCAAGCCCCACGAGAACCAGCACACCTGGTGTCCCAGGGTCACTAAAGTCCCCTCGGCCTGATGACACAGCTTATGACATCATCACAGAAGAGGAAGTGAACTGTGTCCATGACAGAGACTCGTTATACTACACCGCTGTGCTGCCCTCAGAGACACAACAgctAAGCAGCAGTGACATCAGCGGCACAGAAGATTCAGAAGAGCTGGTCGGCGCAGTTCAGGACGCTGAGATCTGCCTGCTTAAATCTGGAGAGATGACGCTCTCTGTGCCGTTCAGTGTGGAGGACGTGGTTCAGTTTGGTGATAAGTCCAGAGAGCTCTTCATCAGGTCCAGCTGTTACAGTGTCATTCTCATAACCGCTGCTCCTCCGGGTCTCACGATCAGCTGGGTCTTCTCCTCCGAACCCAAGAGCATCGCCTTCAGCGTGGTCTACAGGGAGAACCTAGATACCCCTCCAGAGCAGGCCAAGgttCTGATCCCTCTGACAAGATGTAACTCTCATAAAGAAACGATCCAGGGTCAGCTGAAGGTCAGGAACTCTGGAGAATACACACTCATCTTCGACAACTCTTTCTCGAGGTTCCTCTCAAAGAAAGTCCAGTACAAACTGAGCATAGAGAAGCCAGAAGACTGCAGTGGAAGCGACTGTTCTTCGTAGGAAACAGAATCACGCACACTTGTGTCTGTATCAGGTCACGGGGGGGCGGCTTGTCCAAGAATATGCCCGTTATCAAGCCTAACTTCTAATGCTGCTTTCAGTGATTTACACGGTGAATCTCACAAGACGTGTCTAAATCCCACGATTTGAGAAAgtatactttataataaaataagatagtTTTAAGACATTATTTTCTCTAATGATCCCTTATcccatttaatgcaaaaataaaatttttgttaccgaactggaaaaaataaatgcatttacacaaaacATCCCGGGGCATTACTTTAACGTGAATTCgatagagaaataaataaatagataaatctCCCAAGCAATGCAAAATAATAGTTTCTTATTTTAGTTCGTTTGATTTATGACCCGGACATATAGCGAGATTCACTCCGACACATTCCTCTCATGAACGATTGCTCTTCATAACctcttttgaatgattttaataCATCCTTGGCAAACTCCAATAGCCAGAACGGTACAATATCTCTGGCGTACTTATCAAGGAAATGGCCAAAAATACTCAATGAAGGAAAGCCCCCTGAAATTTGCTGTGGTCAGTAGATAGATGAAGGTTTTTATAACGTTGTGcactacagaagagctttattactgtgttttttattacgAAGTAAATGCTTATAATTCATGAGGTTGcttgcataataattataaatataatctaaagATAGGAAACTAATCTATTTTCTTGCGTGGTGTATCTCTTTTTCTAAGTCAACTCTGACTTCTTTGCAGACACATCATCTGTATTCTGAAGGACGAGTACACGGTAATAAGACGAAACTCCTGGCcgttgtggggtttttttccgaccaaaaaatgctttttcattcGGCTGACACCAGGGAAAAATTTATAAGCAATAACTCAGTGAGTGTGTTTCTGCATAAATACGATTGGCGGTGCAATAACGGATCACTCCAGCCTGAAGAAGGTAGACATTGGAAATGGCACGTTTTTATAACGGCTTAATTTGAATGATAAGCATTGATTCTTCACTGTTGCACTTTCTGAACGTGTTATCAGAGCACTTGATCAGAGTACTGtagcagtcttttttttttttttatgtgcagttACTGTAAAGGGCTGTGATATAAGAGTAATGTTACATTACAACTAGTTTGGAGTGGAGCTGAATTAAAACTACTTGGTGGTGTGACTTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU22492 lncRNA upstream 123033 24788885 ~ 24840993 (+) True G15165
TU22524 lncRNA upstream 147596 24813299 ~ 24816430 (+) True G15189
TU22497 lncRNA upstream 166462 24796813 ~ 24797564 (+) True G15169
TU22484 lncRNA upstream 209435 24687556 ~ 24754591 (+) False zcchc2
TU22350 lncRNA upstream 361234 24523424 ~ 24602792 (+) True G15071
TU22581 lncRNA downstream 126958 25105703 ~ 25210816 (+) True G15225
TU22584 lncRNA downstream 126958 25105703 ~ 25169740 (+) False G15225
TU22600 lncRNA downstream 132516 25111261 ~ 25115138 (+) True G15236
TU22605 lncRNA downstream 144555 25123300 ~ 25145006 (+) True G15240
TU22593 lncRNA downstream 170510 25149255 ~ 25157235 (+) True G15233
XM_043265044.1 mRNA upstream 29491 24931582 ~ 24934535 (+) True neurod6b
XM_043264671.1 mRNA upstream 44222 24850763 ~ 24919804 (+) True pde1cb
XM_043264680.1 mRNA upstream 44222 24859964 ~ 24919804 (+) False pde1cb
XM_043264690.1 mRNA upstream 44222 24876870 ~ 24919804 (+) False pde1cb
XM_043264823.1 mRNA upstream 114911 24842778 ~ 24849115 (+) True viml
XM_043264786.1 mRNA downstream 20035 24998780 ~ 25026174 (+) False adcyap1r1a
XM_043264795.1 mRNA downstream 20222 24998967 ~ 25026174 (+) True adcyap1r1a
XM_043264804.1 mRNA downstream 20230 24998975 ~ 25026174 (+) False adcyap1r1a
XM_043264812.1 mRNA downstream 20231 24998976 ~ 25026174 (+) False adcyap1r1a
XM_043265067.1 mRNA downstream 72525 25051270 ~ 25062510 (+) False eef1da
TU22338 other upstream 464341 24493438 ~ 24499685 (+) True G15065
TU22269 other upstream 875585 24083838 ~ 24088441 (+) False LOC122327442
XR_006247041.1 other upstream 1025083 23935921 ~ 23938943 (+) True LOC122323670
unassigned_transcript_256 other upstream 1226904 23737051 ~ 23737122 (+) True trnaw-cca_1
TU21973 other upstream 1416052 23545106 ~ 23547974 (+) True G14831
unassigned_transcript_258 other downstream 62684 25041429 ~ 25041511 (+) True trnal-uaa
unassigned_transcript_259 other downstream 63238 25041983 ~ 25042065 (+) True trnal-uaa_1
unassigned_transcript_260 other downstream 63792 25042537 ~ 25042619 (+) True trnal-uaa_2
unassigned_transcript_261 other downstream 64445 25043190 ~ 25043271 (+) True trnal-uaa_3
unassigned_transcript_262 other downstream 64998 25043743 ~ 25043825 (+) True trnal-uaa_4

Expression Profile