RNA id: XM_043264690.1


Basic Information

Item Value
RNA id XM_043264690.1
length 4456
RNA type mRNA
GC content 0.45
exon number 17
gene id pde1cb
representative False

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 24850763 ~ 24919804 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

gtACCGCAGTACCGTCACACGCTCCTGTGCTCAGAGCGGAGAGGAACACGAGGGACAGGAGGAGAGAACAGGGCTATGACGAGCTCAGCGTCCCGACCAGCGATCTGACTCTCCTCTGCTCCGGCTCGGGATTAAGTTTTTCTTGCTATCTTGGCATCATGGAGTCTCCCACCAGAGAGATCGAGGAGTTTGAAAGCACCTCGCTCAAGTACTTACAGCCCGACCAGATCGAGAAAATCTGGCTCCGACTGCGGGGACTGAGGAAGTACAAGAAAACATCTCAGAGATTACGATGTTTGGTAAAACAGTTGGAGAGAGGAGAGGCGTCTCTCGTGGACCTGAAGAAAAACCTGGAATATGCTGCCACTGTTTTGGAATCGGTTTATATCGAGGAAACAAGGCGATTGGTCGATACCGAGGATGAGCTTAGCGATATCCAATCAGATTCCGTGCCGTCAGAGGTCCGTGATTGGCTGGCCTCCACCTTCACGCGGCAGATGGGCCTGATGCTGCGACGGACCGAAGAGAAGCCGCGATTTCGCAGCATCGTACACGCAGTGCAGGCTGGGATATTCGTGGAGAGAATGTACCGGAGAACCTCTAACATGGTGGGACTGAGTTACCCTCCGTCTGTCATAACAGTGCTCAAGcaTGTGGATAAGTGGTCTTTTGATGTCTTTGCTCTGAACGAGTCGAGCGGTGACCACGCTCTCAAATTCATCTTTTATGAGCTCCTCACCCGATACGACCTCATCAGCCGCTTCAAGATCCCCGTCTCAGCGCTGGTCTCGTTTGTGGAGGCTCTGGAGGTGGGATATAGCAAACATAAAAACCCGTACCACAACCTGATACACGCCGCCGACGTCACACAGACCGTGCACTACCTGCTCCTCAAGACCGGGATGGTGCACTGGCTGACAGAGTTGGAGATTTTCGCAATGCTGTTTGCTGCTGCCATCCACGACTACGAACACACCGGGACCACAAACAACTTCCACATCCAGACCAGGTCGGACACGGCCATCCTGTACAACGACCGCTCTGTGCTGGAGAGTCATCACGTCAGCGCGGCGTACCGACTGCTGCAGGACGACGACGAGATGAACATCCTCTACAACCTCTCCAAAGACGACTGGAGagaGCTCAGGGCGCTCGTGGTCGAGATGGTTTTGGCCACTGACATGTCCTGCCACTTCCAGCAGGTCAAAGCCATGAAGAATTTCCTCCAGCAGCCCGAGGGAATTGACAAACCCAAGGCTCTGTCTCTGCTGTTACACACGGCTGACATCAGTCATCCAGCCAAGAGCTGGGATCTACACCACCGCTGGACTACGTCACTGCTGGAGGAGTTTTTCCGACAGggCGATAAGGAGGCAGAACTTGGCCTGCCGTTCTCGCCTCTGTGCGACCGTAAGTCCACGATGGTGGCTCAGTCCCAGATCGGTTTCATCGACTTCATCGTTGTTCCCACGTTCACGGTCCTGACGGATATGACCGAGAAGATCGTCACTCCGCTCATCGAAGAGGCCACAAGTTCAGGCCTGGCTGGTTTCCGCAGCATTACTGCGGGAGATGCGAAGCGGAGCAGTGTGAACAGCACTGGTTCTGATGCAAGCGGATCTCAAAGCTGCTCGCTCCTCACCGTGGACCTGAAGAACTTCAAGGGCATCTGGAACGAGGAGGTTTTTCTGAACAGGGAGCGGTGGAAGGCGCAGGCGGCCAAAGAGACGGAGGAGAAGGCTAAAAGAGAGCAGGAGGAACAGCAGGAGGCGACGGCAGAGAACCAGGAGCTGTCAGGACCAAAGAAAGACAGGGTGGGAGAGGACGACCCAGAGCCGGGAGGGGTAAACGGACCCCCTGAAGAAAGCCCCCATGACAAATCAAATAACGAAGAGGCACATCAGAAATTACAGAACGGAGAAGTATCTGAAGAGGCAGAATCACCAGCAGAGGAAGACAAGAGAACACTCGATGAAGCTGCAAATGCCTAGAGTGACTTCCAGAGGCGTCTTGAGATCCGATGTCAGACACAGAGCGGAGAACTTACCATCAGGAGAACGCTCGGGTCTGAAGGACCACGTCGCCCTCTAGAGGACACGGCTAATGCTTGCATCACTTTGTGTTCGGCCTCCATCCCCTCCAAATCTCCAGACTTTTGATAAGACTGGTCTCTCAGAATGAGGAAGGACAAAACAGACCAGAGACGAGCGGTCTGTTTTATTTACGGAACCAGAATTCCTTCCCAAACCTTTAAAGTGCAACGGTTGCATCCACTAAGAAAAGCATGCAGCAGCTGAACGCAAGGATTCTCGTTAAAACCTacatttcaaatgctttctATGTTTTTGAGCAGCCTTGCAGTTGGATGACTTGGTATGTGTGCAAAGCTCAAACTgtgacttatatatatatatatatatatatatatatatatatatatatatatatatgtgtatatatatatatatatatatatatatacacacatatatatatatatatgtgtatatataatatgtggcCTGCAGTAAATAACTAATCTTAGCAGCAGTTGCATCTGTGAACAATATTCAGCTTTTGACAACAGCAATGTTACGTTCAGCTATTTTAAATGCGCTTTACCTGACATGGACTGATGCATTACAGCAAACATGCTCTGATGTGAACATCTGCCTCCGACACACGTTTGTTCACCTCATCTGCTAATAGAGGTTGTGTATATGAAAccctaaaatatatatgtctGCGTTTAGATCAGAGCTTTTATAACTTGAGAAAAGCCGTACGAAGTGGCAGTATTTCCTATTCGAGCACGTCTGTGTGCAGCTGTGGAGTAGAAAACGCCTGATTCAACCTAAGATTTTTCCTTCTCTCGCTTACCTTCCGATGCCTTTCTTCGTGTAGTCTTTTTGAAAGCAGCTGAACTGAAACGTCTTATACAGGAACACACAAACTAGCAGTCGCCGTAGACAATGTAAGTCTGACCGTAGTAGCGTGTGAGTCATAACCATATCACTGTGCTCGCTCCGCAATACCTGGATATTACGCCGTATGTCATTTTTACTGGTTTCCTGGGGGTTCGTGAAAAGCTTTTCTCTGTCCATTGAGCAGGTCGTCTCTAGAAAGCCGAAGAGAACATGTCCAGGTCACATGTCACCTCATGAGGAAAAGAATACGATTTTTAGGACTATAAAGAACATAGAAGAGACTgtcaaaaatgctgaaatgccacgattgcattatataaatgagcaaaaattaAAGGCGATAAAGTGAACACTCAAGTTTGGGGTCGGTACACTTTTTTAATACAACAGAAGTCtatttgtttgatgaaaatgcagtaaaaactgtaatattgtgaaatattattacaatttaaaagaacttcTTCctattttagtatgttttaatattgaatttattcctgtgatgcaaagctgaattttcagcatcatactTCAGTCTTTAGCGtgacatgattcttcagaaatcattcaaaagtaAAATTCTTCCGTAATGTTCTAAAcgacttttgatcaatttaatgcattcacagaaaaaaatataccgCAAATAATTTACttcagctacatttaaatacattttgctcAAAGTTAGCCAATTatatgtgttcatttaaatgtagctaaaataaatcgATTGCAACCATTTAACCGGTTAAATGAAAGAGGGTTAAATGTGACCTGTATATGTTCTTCCTTTCCTGAGGTTTATCGTTTATTATGTTCAGCATTCACGAACTAATCCCATAACTGAAACATTGAActcttttcttctgtttgtttgatctgttttgttgtaaatatgtttttctctGAATGAGTGAGATGGGACGCATTACTGGATAAACGCATGCATTCGACTGGATGCGTTAGGTTTTCTGAGGTTGTGACCTTAGTCAAGTTGAGCTTctgaattgtattttatttatacaaaatctgtaaaattctGTATCTCATTCATGTATAATATTTACCAgagttattaatttaaatgtttttttcccccccttacATAATTTTACACAGCAAAATGAATAGAACTGTTTACCCTGTCAAAATGAGAGTAACGGATATGCATTTCTTCCGAAATGAAGCTAATTGTAATTTGATTATGTGGGTCAGATGATTTAGTTCGCCGCCTTGTGGTTTGCAGTAAAGCTTCCTGTAGATTCAGACTATTACCAGAGATCATGTGGCGGTGTGTGCTGAGACGATGCtacggcgtgtgtgtgtgtctgtgtgagagggAGTGTACgagactgcgtgtgtgtgtgtgagagctgaTCGCGTTCGGTTTGTAAAGGTTGACACTGTGATCTTTAGCGTCTAGCCGTCCCCATGATGTCTGTTTTGAGTAGGacgcagagaaagaaaaaatgctgTGTCTACACACGCGTGATTCACAATAAACATCAACTTAAAGGGCTCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU22492 lncRNA upstream 35877 24788885 ~ 24840993 (+) True G15165
TU22524 lncRNA upstream 60440 24813299 ~ 24816430 (+) True G15189
TU22497 lncRNA upstream 79306 24796813 ~ 24797564 (+) True G15169
TU22484 lncRNA upstream 122279 24687556 ~ 24754591 (+) False zcchc2
TU22350 lncRNA upstream 274078 24523424 ~ 24602792 (+) True G15071
TU22581 lncRNA downstream 185899 25105703 ~ 25210816 (+) True G15225
TU22584 lncRNA downstream 185899 25105703 ~ 25169740 (+) False G15225
TU22600 lncRNA downstream 191457 25111261 ~ 25115138 (+) True G15236
TU22605 lncRNA downstream 203496 25123300 ~ 25145006 (+) True G15240
TU22593 lncRNA downstream 229451 25149255 ~ 25157235 (+) True G15233
XM_043264823.1 mRNA upstream 27755 24842778 ~ 24849115 (+) True viml
XM_043264542.1 mRNA upstream 122375 24737017 ~ 24754495 (+) True zcchc2
XM_043264522.1 mRNA upstream 122375 24737017 ~ 24754495 (+) False zcchc2
XM_043264532.1 mRNA upstream 122375 24737017 ~ 24754495 (+) False zcchc2
XM_043222873.1 mRNA upstream 250588 24619987 ~ 24626282 (+) True LOC122327477
XM_043265044.1 mRNA downstream 11778 24931582 ~ 24934535 (+) True neurod6b
XM_043264451.1 mRNA downstream 44222 24964026 ~ 24978745 (+) True fyco1b
XM_043264471.1 mRNA downstream 44222 24964026 ~ 24978745 (+) False fyco1b
XM_043264460.1 mRNA downstream 44290 24964094 ~ 24978745 (+) False fyco1b
XM_043264479.1 mRNA downstream 46222 24966026 ~ 24978745 (+) False fyco1b
TU22338 other upstream 377185 24493438 ~ 24499685 (+) True G15065
TU22269 other upstream 788429 24083838 ~ 24088441 (+) False LOC122327442
XR_006247041.1 other upstream 937927 23935921 ~ 23938943 (+) True LOC122323670
unassigned_transcript_256 other upstream 1139748 23737051 ~ 23737122 (+) True trnaw-cca_1
TU21973 other upstream 1328896 23545106 ~ 23547974 (+) True G14831
unassigned_transcript_258 other downstream 121625 25041429 ~ 25041511 (+) True trnal-uaa
unassigned_transcript_259 other downstream 122179 25041983 ~ 25042065 (+) True trnal-uaa_1
unassigned_transcript_260 other downstream 122733 25042537 ~ 25042619 (+) True trnal-uaa_2
unassigned_transcript_261 other downstream 123386 25043190 ~ 25043271 (+) True trnal-uaa_3
unassigned_transcript_262 other downstream 123939 25043743 ~ 25043825 (+) True trnal-uaa_4

Expression Profile