RNA id: XM_043264704.1


Basic Information

Item Value
RNA id XM_043264704.1
length 5365
RNA type mRNA
GC content 0.46
exon number 6
gene id lrrc24
representative True

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 25089791 ~ 25110776 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

gagagagagagagagagagagagagagagagagagagagagagagagagtcgaCTCAGCTGAGCTCACAGGGAGGAAGAGATTTGGAGAAAGCTTCTTAACCTATTTCAGAGGGGTACCAGACGTGATTTTGGTTGGTTAGACTCGCATAGGCAGGAGTCTCGCGCCCGACTGATATCGATTTGGTATTTTTGCGCGGGATGTGAGGAATATTCCAGCATCGCTGCTGTGAGGATGGCAGGACGGAGCGGTGGCCTTTCGGATCGCAGCTCAAATGCCGCTTTGTTCGCCGTCCAGACGTGGATTGATATTTCATTCATGTGCATCTGAATTCAGTCCGTATAAAGACCAGGAGCGCAGCTCTTCAGCACCGCACGCAGCACCGCGCCGAGTCCACGGTCTGGAGTTGTTTCTGAGATGAATCCTCCTCGGCTCTCGGCGGTGTTGGTGCTCACGCTGGCCCAGCTGTGCTCGTCTTCTGTCGGTTGTCCTTCTGGATGCCGCTGCTATAGCTTGACCGTCGAATGTGGATCCATCGGGCTCAAAGAGATCCCGCAAGGCATCGCGCACGGGACACAGACCATCTTTCTGCAGGACAATGCCATCGGACAGATCCGTCAGCGGGATCTATCTGACCTCGGCCAGCTGCACTACCTCTACCTGCAGAACAACAGCATCTCCACGCTGGAGCCCGGGGCCTTCAGGAACCTGGGCCTGCTTCTGGAGCTGGCGCTCAACGGAAACCGCATCCACCTGATCACAGCGGACGTGTTTCAGGGCCTGGACCACCTGCGCATCCTGTACCTCGCAGGAAACCAGATCACCAGACTCGAGGACTACACCTTCCGCGGACTGCAGCGGTTGCAGGAGCTGCATCTGCAGGAGAATGCGGTGGAGGTGCTGGGAGATCAAGCTCTGGTGGGTCTGTCCTCTCTGGCTCTTCTGGACCTGAGCAGAAACAACCTGAGAACCCTGAGTCCCGCTTCACTCAAACCCCTCGTCAGCCTGCAGGTGCTGAGGGTCACAGATAACCCGTGGCGCTGCGACTGCGCTCTGTACTGGCTGCGTGGCTGGATAAACGAAGAGGGTCAGAGGCTATTAAGCTCAGCCGAGCGGCGGATGTTGTGCGCCGAACCTCCTCGTCTCTCCCATCTCAGTCTGGTCGAGGTTCCCGCAAACAGTCTCATTTGCATCCCGCCCATAGTGCAGCTGGAGCCCAGCCACCTGACGGTGCGTTTGGGGGAGAGTCTCCGCGTGTCCTGCCAGGCGTCCGGATACCCACAGCCTCAAGTCACCTGGAGGAAAGCCTCCCACGGAAAAGCCCAGCTGTCTCCCAGAGGCCTGGTGCAGGAGGTCGGGATGGATGGAGACTCCAAGACCGGAGGGAGGTTGGTGACGGCCAGGCCTGGCAGTAAAGGAGGGCCGGCGAGTCGCGGGCCGGTCCGAGGGGGAACCGATGACGGAGGCGACCGGGAAAGCTTCGATCCCGACACGGGAAGCGGGATGCTGTTTCTCAGCAACGTCACTGTGGCTCATGCCGGACGCTACGAATGCGAGGCCTGGAATCCCGGCGGAGTGGCTCGGGTGACTTTTCACCTCTCGGTGAACATGTCTTCGTCGTTGTCCCGCTCGGAAATCTGGCCTCGATTGCATTCCTCGTCTTACTATCATCCCTCTTCGGTTGACGTGAGTCAGGAGCCCATTTACGAGCTCGAAAGCATGGATTTCAACGCGCTGGGAACCGCCACCCAGACGGCCATCGCGGTGGGAATCTCTCTTTTGGCGTTGACGGCGTTGTTGCTTCTCTGCATGATTTACAGTCGCCACCGGCAACGGCAGAAAGAGGAAGGCGGATACGGCGCCAGCAAAGAGGAAAGCATCCTCTACGTGAACGACTACTCCGATGGTCCCACTACATTCGCTCAACTTGAAGAGTACCGGGACGAACGCCACGAGATGTACGTGTTAAACCGTGCCAAACCGGTGCTGCCTCCGCCGCCGTCCTGCAACCAACCGGGGTCGACGCTCAAAGCCGGCGAGTGCATTCTGACCCCGGGCCGGGCCGTGGGGATCGGACCCCGCCGGGCTCCTGCTGAAGGAGGCGAAGGACCTCCGCTTGATCCCGAAGGGTTGTTCATGAACCAGAGCTTGCTGTTTGACACGCAGATCGCTTATGAGATCCACTGCTGAACCGGATCCCTGGACAGACTTCGAGGTTCTTGCCATAGGATGTTATCCTGCTGAGTTTCCTTTCGTTCTCAGAgcacaaaagtttttttttggtgaaaagcATTGAAGGAATGCCAGATATTAAAGCTGTGGTGTGTAGTTTCAGTGCCACCAAATGTTGAATCAGTGTTGCAACGCTCTTAAAAGTAAAAGCGATACCAAAGAAGAACTATTTTTGGTTGCCCTAAATGAACCTGTcagttttataaaacattaaagttttttggtgtgaaggacattttaataataatctaaagaacttTTTTTCACTGTATAGAACCTTTTGAGCAATGGAAAGGTTAAAGGTTCCTAACTGGCATCTATGGTTTCATTAAGAACCTTTAACAGTCATGGAACGATTCCTCAAAAAGTTATAGcgaaaaaggttctttaaagcatttaaatgttcttcacacgaagagaaatttgttcatttaaaggaGTCATGTGATGCCATTTTAAAGATCTTTATTTTGCGTATTTGGtgctttaatgtaaaaaaaagctattttattaatactgtaCACTATTGTAGCTCCTCTATGCTCTGCCTCTCTCAAACACGTCATTTTCGACAAgcacagtctgctctgattggccagctgaccCAGTTCACAGTGATTGGCCGAGCACCACAAGCACGTGTCAGAAATGTAATGCCTCCCATAATTGCGTGTTCATCTTTATCAAACTTGAAGCGATGACGCTCGTACTGTGATGTGACcccataattttttaaatagccaGTTTTGTACTCTTCTAGGTTCACAAAACGTCGTCCATAAAAATGCGCAAATTCGAACATTTTTGGTGGTGTTGTAAGTAATTTTAATGAATCCTAACTGCATCTACTGTCGAAAGGTCAAATAAAGAGCGTTTGCTTCggtacagaaacacacagcttCTCCCGACACGGCTGAAACCATGCTTTGTTTCTTAGCATTAACATTCGGGCAGCATTACGCAAATATTACCACATCTTGATGTAGGCATACGGGGGCATATTTTAATGAGGCGTTTTAGCCCTGTCTGAATCAGCCTTCTTTTTTAGATAGAACAAATCCTTTTGTTCGAGACTTTGAGCTTTGCGGATCTTATACGTGCACAAACAGCAACATACCGCAttaaagagaaggaaagaaagaaaagaaaattgcatCATGTGACCCCTTTAAGAACTAATCACTGAAAGGTTAATTCTGGGAACACAACGCTGGTTCTTCAGTTGCATTGCTACAAAAAACACCTTTGGgaaggtttattttttaagcgtgTATTTTGTGTGGCTCAAACAAGCAGAGAAATGTTACAGACGTCGGTGTTTACTCTCTTTGGGGAAATCAACCTACAAATGGCTAGTTATAATCATCTCTGGGATTGCACACAGCAGCTTTCagggaatagttcatccaaaaattgaTGCCATTTGCATTGTTTGCATGATTGTTTCGTTCCGTAAAATCACaaatggagattttttttttgaaagcactAGGTTGCGTTAtcggttattttaaaaaaaacatatttcattttctattctgcatatttaaatagttcTTAATCATGTTCCGCCGAGGAAAAGTAAAAGTATGGGTTTGGaaaattaagtaattttatttttgtaattggaaTCATTTTTGAAACATGTGAATGCTTTTGACGgagaaaaaatagcattttttttctacagtgaTAGGGGTGCTAGGGAAAGGAGAGAAAATACAGCTGTGAAGCATGATTGCAAAAATACATCAGGGATAAAATACAAGTGAGCATACGGAGAGTGAGAAAAAGGCTTTCCAAGAGGAGTCCAGTGAAATAATTCATAGACTAGCATTGAACAGTTTGACgtcagtgaagacatttataattttacaatagatttccatttcaaatgttcTATACttcaaagaaacctgaaaaagtATCacggttttcacaaaaatataaagtttcAACATTGATCATTTAtctaaataatgtattttcaacagaaaatcagcatatttgaatggTTTCTGTAGAATCATGTggctggagtaacgatgctaaaatcacaggaataaattactttttataatacatttaaatagctcacagttattttaaattataataacaactCACAATATTATGTCTgtattgtttataaaataacGATACAGCCGTGGTGAACACTATGAGACTtcctttaaattattattattaatttttatttacattttttgtagttGTGAGGGCTAAAAATTTCAACAACCCAGCGTTCATCACTCACTACGACCGGCCTGATCATTCACCGCAGCCTCCTATTTGTTTGGACCAATAAATGCCTGAATATgaatttttgcatgaactattCCTTCTTTAACAGTGCAGGTTTTTGCCGAAAGCAAATCTTGTGGAATAAGAGCTGTTACCTACACCTTTGAAAGAAGAGGTTACGCGAAACTACCAAAAACTGCTATATTTTATCGTGTTACTGTGAGATGAAGTGATCCAGGCGGCTGAGGGTTTGACCTCTTGGACAGGGAGCGAGGACAACGGCGAAGGACGTTTGTCGGGACATCCCTGCGTCCAGGCAGTGTGAATAGCTCAATGTCTTTCTTCTCGCAAATGCTGTATCCTTTCTTTTCCAACGCATTCctgtgtgtattaatgtgtgAACGGCAGGCAGCAGAAGAGAACCAAAcctgctgtaaacaaagaaccAAACGCGGGTCGGAGGTTTGTTCACTGCAGCCTGGATCCAAGTGAAGCAGTCGCATCTATTTCCCGTCTGAGGCTCGTTTGCTCTCCTCTTGACCTCCGTTGGAATAACACTGTGAATAAACAAACAGGACTCTACATTCACAGCTAGCTTTTGTAAGTTATTAGATATGCCGGTTTCTTTCATATAACAGTATTGTTTTTGAGagtgggtttgttttttttttttcctcttggcTTTTTTCTTCCCCAGCGTTACACGGACTATCGAGTAGTGAAGACATCAGGGTAAACTgtataaaagcattcatttcagcTTGTGGGAACATCTCAAGGTGTTAAGCTTCTGCACTCTAGTTTGTGTATTTCTGTCAAATGTCTATCAAATATCAACCTATTTTATCCGAATAAATTATGCCTTTATTTGA

Function

GO:

id name namespace
GO:0005515 protein binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU22492 lncRNA upstream 248798 24788885 ~ 24840993 (+) True G15165
TU22524 lncRNA upstream 273361 24813299 ~ 24816430 (+) True G15189
TU22497 lncRNA upstream 292227 24796813 ~ 24797564 (+) True G15169
TU22484 lncRNA upstream 335200 24687556 ~ 24754591 (+) False zcchc2
TU22350 lncRNA upstream 486999 24523424 ~ 24602792 (+) True G15071
TU22600 lncRNA downstream 485 25111261 ~ 25115138 (+) True G15236
TU22605 lncRNA downstream 12524 25123300 ~ 25145006 (+) True G15240
TU22593 lncRNA downstream 38479 25149255 ~ 25157235 (+) True G15233
TU22618 lncRNA downstream 79244 25190020 ~ 25330287 (+) True G15250
TU22586 lncRNA downstream 88915 25199691 ~ 25206930 (+) True G15226
XM_043265067.1 mRNA upstream 27281 25051270 ~ 25062510 (+) False eef1da
XM_043265118.1 mRNA upstream 27281 25051270 ~ 25062510 (+) False eef1da
XM_043265142.1 mRNA upstream 27281 25051270 ~ 25062510 (+) False eef1da
XM_043265084.1 mRNA upstream 27281 25051285 ~ 25062510 (+) True eef1da
XM_043265076.1 mRNA upstream 27281 25051285 ~ 25062510 (+) False eef1da
XM_043222921.1 mRNA downstream 105712 25216488 ~ 25219623 (+) True crygn1
XM_043264772.1 mRNA downstream 111368 25222144 ~ 25236609 (+) True LOC122362952
XM_043264908.1 mRNA downstream 189424 25300200 ~ 25304723 (+) True LOC122363040
XM_043222945.1 mRNA downstream 283380 25394156 ~ 25406903 (+) True LOC122327519
XM_043216497.1 mRNA downstream 304743 25415519 ~ 25419928 (+) True LOC122322894
unassigned_transcript_272 other upstream 39152 25050557 ~ 25050639 (+) True trnal-uaa_14
unassigned_transcript_271 other upstream 40105 25049604 ~ 25049686 (+) True trnal-uaa_13
unassigned_transcript_270 other upstream 40659 25049050 ~ 25049132 (+) True trnal-uaa_12
unassigned_transcript_269 other upstream 41312 25048397 ~ 25048479 (+) True trnal-uaa_11
unassigned_transcript_268 other upstream 41869 25047840 ~ 25047922 (+) True trnal-uaa_10
TU22577 other downstream 59960 25170736 ~ 25175288 (+) True G15224
XR_006253181.1 other downstream 111368 25222144 ~ 25236609 (+) False LOC122362952
TU22800 other downstream 283555 25394331 ~ 25397882 (+) False LOC122327519
TU22814 other downstream 381484 25492260 ~ 25502158 (+) False LOC122362387
TU22813 other downstream 385287 25496063 ~ 25502158 (+) False LOC122362387

Expression Profile