RNA id: XR_006253181.1


Basic Information

Item Value
RNA id XR_006253181.1
length 3622
RNA type transcript
GC content 0.50
exon number 12
gene id LOC122362952
representative False

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 25222144 ~ 25236609 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCCATTTTGGACGCCGTTCAGCTTTTCGCATGTCAGTCCCTCCTTCCCCCTCCAACTGCCCCGGCAGAGGGGGAGAAACACGCACCAGGACGCACGCGAGGGGGCTTCGCTTCTGCTCCAAGCGCCCAAACACTCGCTCCCGCTGCCGCCGCCCGGCCAGAATGAAAAGCTGGATGTTTGCGACATCAGGGACTTTGTTTCCGATCCGCGCGCTTCTGAGGGACACGCCGCGCCGTTGTGAAGAGGAGCTCGCGTTGTTATTGTAGCGGGCGAAGAATAGCGCGCGGGCCCTCGCGTTCATGCGTTTCATTTCGCTCTTAAATGCTTTCGCGGCATAAAGGGCGCCGTTTATCGCCGGGATCCTCGAAGGAAGGAATATGTTTGTTACCTGGCTGACTTTGGCGCTCGTCTGGTGCTCAGGAGGCAGTCAGGCGGAGGTGGCGACTAGAGAGTGCGTCTACTACAATGATAACTGGCGGACAGAGAAAACCAATCAGAGCGGTTTTGAGAGgtgtgagggagagaaagaCAAGAGGCTGCACTGTTACGCCTCCTGGTTGAACTCCACCGGAACCATTCGTCTGGTCAAAAAAGGCTGCTGGCTCGACGATTTTAACTGTTATGACAGacaGGAGTGTGTGGCCACAGAGGAGAGTCCTCAGGTGTTCTTCTGCTGCTGTGAAGGAAACTATTGCAATGAGAAGTTCACACACCTGCCAGAAGCCATCGCTCCTGCAGTAAAGATCCAGCCTCCTCAGCCAGGGCCGTCTCTGTGGGGTGTGCTGGTTTATTCTCTCATTCCTTTCGCCATCCTCTCTCTGGCCCTGGTGCTCGCCTGCTGGACGTACCACCAGCGAAAACCACCCTATAGACACGTTGACATTGGCCAGGATGCTGGTCTTCCTCCACCGTCTCCTCTGGTTGGTCTGAAGCCACTGCAGTTGCTAGAGTTAAAGGCCAGAGGGCGCTTTGGCTGCGTCTGGAAGGCCCAGTTACTGAGTGAATATGTGGCGGTGAAAATATTTCCCATCCAGGACAAGCAGTCGTGGCAAAATGAAAGAGACATTTACCTCACTGAAGGGTTTAAACATGAGAATATTCTGCATTACATCTCAGCAGAAAAACGCGGCACAAACCTTCAGATGGAGTTGTGGCTGGTCACAGAATTCCACGAAAGGGGTTCACTAACAGATTACCTGAAGGGAAACCCTGTGAGCTGGCCTCAGTTGTGCCATATTTCTGCAAGCATGTCCCGTGGCCTGGCGTACCTTCACGAAGACCTTCCTTACAGAGCAGAGGGACCCAAACCCGCCATCGCACACAGAGACTTCAAGAGTAAGAATGTCCTGCTCAAGACTGATTTGAGCGCAGTGATTGCAGACTTTGGGTTGGCTGTGCGCTTCGAGCCTGGGAAACCGCCTGGAGATACACACGGCCAGGTGGGCACTCGGCGTTACATGGCTCCAGAGGTGCTGGAGGGAGCCATTAATTTCCAAAGGGACGCCTTCCTAAGGATCGACATGTACGCTCTAGGACTGGTGCTGTGGGAGCTGGTGTCTCGCTGCACCGCCTCCGATGGTCCTGTAGGTGAGTACCAGCTGCCCTTTGAGGAGGAGGCGGGCCAGCATCCTTCACTAGAAGACCTTCAAGATGTGGTGGTCCACAAGAAGATGCGGCCCATCTTTAAAGACTGTTGGATCAAACATCCGGGTTTGGGCCAGCTGTGCGAGACCATCGAGGAGTGCTGGGACCACGACGCAGAGGCGCGACTGTCGGCCGGCTGCGTGGAGGAGCGCATCTCCACCATCTCCAAGACCGCCAACACCATCAACACGTCTACCTCGGAGTGCCTGGTCtccatgatgatgatgacgacgtCCCACAGCGACACGGACCTTCCTCCCAAAGAGTCCAGCACCTGAACATCAGGGACGGCGAACCACGGCGTTCATCGCTCCAGTAAATGTGAACTTTGCTGCTAATTTGATCTCTGGATCGTCATGTATTTAATTTCTTCTTCTTGCATCGTCGGATCGCTTTCACCAGCACATTCATCTACTGTACTCTTCCGAGAAGGAAGGCACACACGGAGAAACCTCAAACGCGAGAAGACCGAACTCTCAGAGGGCATTCAGGGGATCGTTTCGGACTGCTGGGATATGAGCACACGTTACCTCATCggttttaatgccatttttaagttgttgtttttttgccttCACTCCATGAATACCTCCATCCCGAACGCTCGACCCTCGGGTTCTATCAAGACGATCTGATGACTGTTACGCAACCTTCCAAGAGCACACAAGGTCCTTTTTGTACTCAGTGAATTTTAGTCTAGTTTTAACGTACCCTTTCTTCCTCGAAGCGTCTCGTGGGATGTTTTTTGTGGCGTTTCCTGCAGCCGTCTGGGACACCGGAAGCGGAAGGCAGCGGGACTGTTACGATTCGAGTTGCCTTTCGCGGCGTCGGGATTGGTTTTAATGTAGCATCCGCTTGTGTTGAAGTATCTGAAGTCAGACGTGCCATCGGTTCAGCgttcgtttttgtttttcttctgagtGACGAGCTGCAGTCCAAGTGTTAGTTCTGCGGCCGCGTGAAGAGCAGCGCTGCGTTACAGGATTGCTTTCGATCACGGCTCAATGTTTGGGTGCACCAGGAAAGCGCGTGATGTTTATCCGCTACACTACTCAGTGGCGATATCTTCAGAGCTCGCCTGTTTCCCGCAATAACTCGAGTGTTGAAGACCGAATGTCCGTAGTGCTGTACTCCTCCAATCATCTCATGGACTCCGGCGTTGTTCAGAAACGGGCAGCTTTTCTCAGACTCGTTGGTCGGCGTAGCGCTAACACGATCACTGAATCTCGACCGTCATGCTCTCAGTGATTAGATATACCTCAGatattgtgacttttttatatatgaatatatctaaagtattttattcagtttttgtggtagcaatataatttaatatccAGCTGCTTTTCTGTGATTCCCGgagattttctttttagttttgacACAGAAGGTGCTCTGAATTTGATTGCCAGGTGCTCGGTGCGTTTCCAGCATCCGCAGGTTCAATGGCTTCTGAGGTTCAGATGAACTGTTCTCTGAGGAGACGCAAACCTCCCTCACTTCTCTTTTAGTttacgtttgtttgtttgtttgtgtggtaCACGTATCTTCTTCCCTCTTCGTCTCCGTCTTATCAATTGTATTAAGTTGGATTTCTCTCTTATCAAATCAGggatttgaaatataattaaagtattGCAGTGCAAGTTGTGCAAATTTAGTTGAAGCCAAACTTTGTATGCTATCAGGTGTTGATGTgtgatgtgtatataaataacgTCATCGGATCTGCTAACTGATGTAGATGAAGCATCTTTTACTCTCGTTATGTTTCGCATTAATAAACCCTGAAGAAGAGTTCGTACGTTTAGGACAACCTGAGGAGATTTCCTTCGCCGGCTTCTCATGAAGGATCAGGAACGATGGAGGTCTGTTGAtgtggttgttttgtttttttttattattactattattatttttactgctgCTAATGTAGTAAATGTATGTTGTGTTGCCCGGTTTGGGTCATTTCAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU22581 lncRNA upstream 11328 25105703 ~ 25210816 (+) True G15225
TU22586 lncRNA upstream 15214 25199691 ~ 25206930 (+) True G15226
TU22584 lncRNA upstream 52404 25105703 ~ 25169740 (+) False G15225
TU22593 lncRNA upstream 64909 25149255 ~ 25157235 (+) True G15233
TU22605 lncRNA upstream 77138 25123300 ~ 25145006 (+) True G15240
TU22818 lncRNA downstream 228841 25465450 ~ 25595289 (+) True G15392
XM_043222921.1 mRNA upstream 2521 25216488 ~ 25219623 (+) True crygn1
XM_043264704.1 mRNA upstream 111368 25089791 ~ 25110776 (+) True lrrc24
XM_043265100.1 mRNA upstream 159634 25051285 ~ 25062510 (+) False eef1da
XM_043264908.1 mRNA downstream 63591 25300200 ~ 25304723 (+) True LOC122363040
XM_043222945.1 mRNA downstream 157547 25394156 ~ 25406903 (+) True LOC122327519
XM_043216497.1 mRNA downstream 178910 25415519 ~ 25419928 (+) True LOC122322894
XM_043263859.1 mRNA downstream 255651 25492260 ~ 25516180 (+) True LOC122362387
XM_043258956.1 mRNA downstream 334532 25571141 ~ 25574135 (+) True LOC122358952
TU22577 other upstream 46856 25170736 ~ 25175288 (+) True G15224
unassigned_transcript_272 other upstream 171505 25050557 ~ 25050639 (+) True trnal-uaa_14
unassigned_transcript_271 other upstream 172458 25049604 ~ 25049686 (+) True trnal-uaa_13
unassigned_transcript_270 other upstream 173012 25049050 ~ 25049132 (+) True trnal-uaa_12
unassigned_transcript_269 other upstream 173665 25048397 ~ 25048479 (+) True trnal-uaa_11
TU22800 other downstream 157722 25394331 ~ 25397882 (+) False LOC122327519
TU22814 other downstream 255651 25492260 ~ 25502158 (+) False LOC122362387
TU22813 other downstream 259454 25496063 ~ 25502158 (+) False LOC122362387
TU22853 other downstream 362852 25599461 ~ 25599926 (+) True G15410

Expression Profile