RNA id: XM_043265084.1


Basic Information

Item Value
RNA id XM_043265084.1
length 1635
RNA type mRNA
GC content 0.52
exon number 11
gene id eef1da
representative True

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 25051270 ~ 25062510 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AGCTATAAGTGCGCGTTACCCGGTTTCCTCGGTCTCTTTCTGTAAAAGGGAGTCCGGTGGAGAAGTTCGACTCGAACCGCTTGTCGCTTATCAAACTCTTCGAAAGGAAGGTGAAAAGGTCTGTCAACGCTTGTTTTGTCTGAACACCTCAGCAGCTAGAGGATGGAGAACCAGCAGGGGTCTCAAGCCAAAGAAGAAACTAAACCCGAACAGACAAGCAATCTGCGAATTCAAACGACGGAAAGAGAAAGCGCACTCGTTCATCCCGGTCTGAAAATCAGGGTTCGGATGAAGGTCGTTTCCATCAGGAACTGACCTCTCAGGGCATTAGAGGAGAAAAAGTTTGGTTCAACCGCAGCATATATGAGCAGGCCGACGATGCTTATCAGTCCTTGTTGAGCGCAGGGACCAGGACACCTCCGGTTTCGTCCTCCCCAAAAGATCGAATTCCCCGCACCCTGGTCTTCAGGGCTAAACGCAACGGTGCACAACAACCCCAAGAGGAGCAGAACCACACATACACCCGTTCTTATGCCTCGCGTCAAAAGCAGCGGGGTTCGACGCACCAGCGCTCCTCGTCTGAACCTGATCGGCAGCTCCCAAAAAGTAACAGGAAGAGGGTCTTCTCTGAGACCGAACGCCCCCCTCAGAAAACGGACAACATCACAATGAGTGGACTTCAGGGACTCGCCCAGGAGAACATCTGGTTTGACAAGTCCAGATACGACGAGGCTGAGAGATGCTTCTACGAGGGCATGAACGGCATCCCTCAGACGTCTCAGGAGAAAGATGCTAGTGCCATCCTGCAGGACATTGCTAAAGCCCGACAGAATATCCAGCAGTCCCTAGCCGGAGTGAAGACCGCTCTACAGGGTAGTAAAGGGCACGCTCGCACTCAAAAACCGCGGGAGAGGAAGACCAGTCAGAATGCCAGCAAGTCTGAGGATCAGAGCGAGCTGGTCTCTCGTCTGAAGAGTCTGGAACTGGACAACAAGAATCTGCACAAAGtGGTGGATGATCTGAGAGCCATGCTGTCCAAACTGGAGTCTAGAATGGCTGTCCTGGAAAAAAGCCAGGCCCCTGCTTCAAAGAGTGTTACCGTTACAAAGGCTGCTCCTGTCCAGAAGCCCAAGGTCGAGGAACACAATGGCGCTGACGATGAAGACGACGATATTGACCTGTTTGGCAGCGACGAGGAAGATGAGGAGGCAGAGCGTATCAAAGCAGAGAGGGTGAAGGAATATGCTCAGAGGAAAGCCAATAAACCAGTTCTCATCGCCAAATCCTCCATCCTGCTGGATGTCAAACCTTGGGACGACGAGACCGATATgtcgaagctggaggagtgcgTGCGCTCCATACAGATGGACGGCCTCCTGTGGGGAGCTTCTAAGCTGGTTCCTGTCGGCTACGGCATCAAAAAGCTGCAGATCGGCTGCGTGGTAGAAGACGATAAAGTGGGAACAGACATTCTGGAAGAGGAGATCACCAAATTTGAGGACTACGTCCAGAGTGTCGACATCGCTGCCTTCAACAAGATCTGAGCCTCTCGCCTCCAAAGAAGCACCTCACACTGGCCTACTGCTGCTTTTATATCTCACGGTTACCAATAAACTGTTCAGCCACGTGAACCAA

Function

GO:

id name namespace
GO:0006414 translational elongation biological_process
GO:0005853 eukaryotic translation elongation factor 1 complex cellular_component
GO:0003746 translation elongation factor activity molecular_function

KEGG:

id description
K15410 EEF1D; elongation factor 1-delta

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU22492 lncRNA upstream 210292 24788885 ~ 24840993 (+) True G15165
TU22524 lncRNA upstream 234855 24813299 ~ 24816430 (+) True G15189
TU22497 lncRNA upstream 253721 24796813 ~ 24797564 (+) True G15169
TU22484 lncRNA upstream 296694 24687556 ~ 24754591 (+) False zcchc2
TU22350 lncRNA upstream 448493 24523424 ~ 24602792 (+) True G15071
TU22581 lncRNA downstream 43193 25105703 ~ 25210816 (+) True G15225
TU22584 lncRNA downstream 43193 25105703 ~ 25169740 (+) False G15225
TU22600 lncRNA downstream 48751 25111261 ~ 25115138 (+) True G15236
TU22605 lncRNA downstream 60790 25123300 ~ 25145006 (+) True G15240
TU22593 lncRNA downstream 86745 25149255 ~ 25157235 (+) True G15233
XM_043264786.1 mRNA upstream 25111 24998780 ~ 25026174 (+) False adcyap1r1a
XM_043264795.1 mRNA upstream 25111 24998967 ~ 25026174 (+) True adcyap1r1a
XM_043264804.1 mRNA upstream 25111 24998975 ~ 25026174 (+) False adcyap1r1a
XM_043264812.1 mRNA upstream 25111 24998976 ~ 25026174 (+) False adcyap1r1a
XM_043264479.1 mRNA upstream 72540 24966026 ~ 24978745 (+) False fyco1b
XM_043264704.1 mRNA downstream 27281 25089791 ~ 25110776 (+) True lrrc24
XM_043222921.1 mRNA downstream 153978 25216488 ~ 25219623 (+) True crygn1
XM_043264772.1 mRNA downstream 159634 25222144 ~ 25236609 (+) True LOC122362952
XM_043264908.1 mRNA downstream 237690 25300200 ~ 25304723 (+) True LOC122363040
XM_043222945.1 mRNA downstream 331646 25394156 ~ 25406903 (+) True LOC122327519
unassigned_transcript_272 other upstream 646 25050557 ~ 25050639 (+) True trnal-uaa_14
unassigned_transcript_271 other upstream 1599 25049604 ~ 25049686 (+) True trnal-uaa_13
unassigned_transcript_270 other upstream 2153 25049050 ~ 25049132 (+) True trnal-uaa_12
unassigned_transcript_269 other upstream 2806 25048397 ~ 25048479 (+) True trnal-uaa_11
unassigned_transcript_268 other upstream 3363 25047840 ~ 25047922 (+) True trnal-uaa_10
TU22577 other downstream 108226 25170736 ~ 25175288 (+) True G15224
XR_006253181.1 other downstream 159634 25222144 ~ 25236609 (+) False LOC122362952
TU22800 other downstream 331821 25394331 ~ 25397882 (+) False LOC122327519
TU22814 other downstream 429750 25492260 ~ 25502158 (+) False LOC122362387
TU22813 other downstream 433553 25496063 ~ 25502158 (+) False LOC122362387

Expression Profile