RNA id: XR_006247501.1


Basic Information

Item Value
RNA id XR_006247501.1
length 1162
lncRNA type inter_gene
GC content 0.38
exon number 3
gene id LOC122326720
representative True

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 8027750 ~ 8031107 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTGAAAACAAGAgttacacaaagaaaatagttgataaaactgttaaaaggaTATATCCACTTGTGAATGTGTGGCGTCAGCGAGTACATGGTTTACTTCGACGATCACACAAGAGTTGCGTTATTGCTCGTGAGAGCTCGACAGGTGTGGGAGGGGAAATTCAGACCACGTTAATGGAGGTCGAGCGTGAGTTACCCTAAAACGTCACAAGAGTTAAAGTGCTAAATAATGTCTCTGTCAAATGTGAGCAGATTATTACAGAGAGAATAAAACCGTTTGACAGGAAGATCAATGGTTGACTTGATTGATTGAGCATCCACCCAAATGAATGACACCCCGGAGACACTCTCCCTGTGTCAGATGGATAGATGTACCAATACTGATGATCTAAAAATCAAGATTGCTTGGAAAGCACATCAATGCAGTAACAAATTATGTGCGTGAGCACATTCTGCAGTTTAGAAGAGGTCTACAGGAGAACAAATGTCCATGTCTTTCTCTCATTTTTGCTGttgctgaaaataaatacaattatctTATAATGGGATCCATAGAGATAAAAGTAGTCTTCTATCAAACCTCTGACAGAGAAAGGATGTTGAATGGATAGAAACTCCAGTTAAAGTGCTTCTTTTATCAGCACAcctttttatatgcaaatgtggCAAGTTGCCTATTTACTGGTACAGGAATTCAGGTGAGAATTCATTGCATCTCTTCTCCAGCTGTGGCCTATAATCAAGTGCTGACAAACTCAAATGTGGAAAAACATATTTGGGTTCATATGTGTTGGAAAACCAGCATTTGCAGTTGTTCTGGGCATGGAATTAACAATTCTTTGAAAACTGCTCCCACTGtctgtcacatggactatttgtTATGTAAAATTTTCATACGTTTTTTCTTTAAGTTATTTTCTTAAAGAAGAGAGTACCTTGCACAATCAGGCTTTTCCTAAATTGCTACGTTAATTGTACTATTCCGGCGTCGTGGAGCAACTTCAAAATCTGGTGTAAACCTTCAAAAGTTTTAGTGCTAACAACAGAAGTGAGTAGAACAAGTCATTAAGGCTAAATAAGACCAAGGAGCTTACTGAAGGAGCTATTGAGGGATTAAAGGCATTTTGGTGCAGAAGGACCATCCTGAATTGAAGTAGATTTAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU15166 lncRNA upstream 71544 7955793 ~ 7956206 (+) True G10188
TU15160 lncRNA upstream 145273 7874483 ~ 7882477 (+) True G10183
TU15156 lncRNA upstream 241918 7785478 ~ 7785832 (+) True G10179
TU15065 lncRNA upstream 357292 7567310 ~ 7670458 (+) False G10127
TU15180 lncRNA downstream 50710 8081817 ~ 8090536 (+) False G10198
TU15177 lncRNA downstream 50839 8081946 ~ 8090536 (+) True G10198
TU15183 lncRNA downstream 52429 8083536 ~ 8084031 (+) True G10200
TU15184 lncRNA downstream 52429 8083536 ~ 8089471 (+) False G10200
TU15209 lncRNA downstream 188158 8219265 ~ 8262830 (+) True G10219
XM_043256906.1 mRNA upstream 636715 7388418 ~ 7391035 (+) True ptger4c
XM_043256194.1 mRNA upstream 681095 7340271 ~ 7346655 (+) False dmbx1a
XM_043256186.1 mRNA upstream 681095 7340271 ~ 7346655 (+) True dmbx1a
XM_043216752.1 mRNA upstream 727649 7285670 ~ 7300101 (+) True gng12a
XM_043218822.1 mRNA downstream 284024 8315131 ~ 8318467 (+) True glula
XM_043263850.1 mRNA downstream 342131 8373238 ~ 8382443 (+) False elovl1a
XM_043263841.1 mRNA downstream 346185 8377292 ~ 8382443 (+) True elovl1a
XM_043263798.1 mRNA downstream 355770 8386877 ~ 8403214 (+) True cc2d1b
XM_043263812.1 mRNA downstream 355770 8386877 ~ 8403214 (+) False cc2d1b
TU15034 other upstream 445365 7505591 ~ 7582385 (+) False G10108
TU14783 other upstream 1040631 6986298 ~ 6987119 (+) True G9925
TU14736 other upstream 1335375 6691668 ~ 6692375 (+) True G9889
TU14734 other upstream 1336971 6690372 ~ 6690779 (+) True G9887
TU14569 other upstream 1659796 6367177 ~ 6367954 (+) True sst2
TU15202 other downstream 75758 8106865 ~ 8107777 (+) True G10212
XR_006252402.1 other downstream 1131504 9162611 ~ 9171915 (+) False olfm3b
TU15832 other downstream 1715487 9746594 ~ 9751212 (+) True arpc5a
XR_006247735.1 other downstream 1880521 9911628 ~ 9916861 (+) True znf414
XR_006247736.1 other downstream 1880521 9911628 ~ 9915491 (+) False znf414

Expression Profile