RNA id: XR_006247535.1


Basic Information

Item Value
RNA id XR_006247535.1
length 1024
lncRNA type inter_gene
GC content 0.40
exon number 3
gene id LOC122326923
representative True

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 24427986 ~ 24435655 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CCATGTATCTGGAGATGAAATGTTCTACAGCAAGAAAAGGACGTGGGAATCCAATAAGAATGACATCCGCATCTGTAGAATGAAGGGCAAACACGAGgatGAAGCAAACCACTGTGTATGCCGAAGATGCAGTATCAACCCCCTCCTTTCctgcaatgtgttttttacaGCAAATTTACAGCTAGTTTTGTTTCAGATTGGGATAGCTTTTATTAGCAGtcaggctgtttttgtttttaggcaaacctggcaaccctggctAGAGCTTGACTAGAGCTGGagaccatttttaaaaactgaactcGACACACTTAAAGTACACGTTTTTCCATCGCTGACCACAGAATCTAGTCTTTGAGAGATGACTAACGGCTAAGTCAGTCCACTACACtccaatatttttgaaaataggctcatttttcAACTCATCTGGAGTTAAACAGTCGGGTTTTACCATTttcaaatccattcagccgatctccaggtctggcgatagcacttttagctgcagcttagcgtAGATCATCCAATCACGCTCAAACAAATGACCAAagattttcaatgtttttcctattttaacTCTTATGTAACGATATTCTGCAGTGCCTAAAATAGCCCCGCGGCTTTATCAGGCCCTGTGTAGTATCGTTCGAAAACTGTagaactcaacttattaactctgggggagttgaaaaattgtgttattttaatgaccAGTGCAAGTCACGACTAGGCAACAAAATAAATCTCATGATAATTTAACTACGTACCAAAACAAACATGGACGTCAACAGACAGCTGGCTGGTTTTATTTGCTGCGAGGTTTGtccagaaaaaggaaaaagtaaaaaaaaattctgataagATGTTCTTCTTCGCACAGCTGCTTCCCTCAAAGACAACACTGCAgacatctgtgtttttattaaattactaaaacgttcaaggtttgtttttcttagttCAGGCTTAGCATGATCTGTCCTCTTATACTGGTGTTGGTAATAAATATCACAGCAGCGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU22332 lncRNA upstream 5974 24255205 ~ 24422012 (+) True G15059
TU22326 lncRNA upstream 176172 24251145 ~ 24251814 (+) True G15058
TU22325 lncRNA upstream 184748 24241897 ~ 24243238 (+) False abhd17aa
TU22317 lncRNA upstream 196730 24220986 ~ 24231256 (+) False LOC122325249
TU22341 lncRNA downstream 64584 24500239 ~ 24501316 (+) True G15067
TU22339 lncRNA downstream 67097 24502752 ~ 24506398 (+) True G15066
TU22343 lncRNA downstream 72231 24507886 ~ 24513061 (+) True G15069
TU22350 lncRNA downstream 87769 24523424 ~ 24602792 (+) True G15071
TU22484 lncRNA downstream 251901 24687556 ~ 24754591 (+) False zcchc2
XM_043257880.1 mRNA upstream 177995 24241872 ~ 24249991 (+) True abhd17aa
XM_043222839.1 mRNA upstream 310352 24116742 ~ 24117634 (+) True LOC122327453
XM_043222826.1 mRNA upstream 312879 24112777 ~ 24115107 (+) True LOC122327448
XM_043220920.1 mRNA upstream 316303 24109663 ~ 24111683 (+) True LOC122326195
XM_043222812.1 mRNA upstream 331089 24087971 ~ 24096897 (+) True LOC122327442
XM_043220538.1 mRNA downstream 113640 24549295 ~ 24551538 (+) True LOC122325496
XM_043222873.1 mRNA downstream 184332 24619987 ~ 24626282 (+) True LOC122327477
XM_043264542.1 mRNA downstream 301362 24737017 ~ 24754495 (+) True zcchc2
XM_043264522.1 mRNA downstream 301362 24737017 ~ 24754495 (+) False zcchc2
XM_043264532.1 mRNA downstream 301362 24737017 ~ 24754495 (+) False zcchc2
TU22269 other upstream 339545 24083838 ~ 24088441 (+) False LOC122327442
XR_006247041.1 other upstream 489043 23935921 ~ 23938943 (+) True LOC122323670
unassigned_transcript_256 other upstream 690864 23737051 ~ 23737122 (+) True trnaw-cca_1
TU21973 other upstream 880012 23545106 ~ 23547974 (+) True G14831
TU21525 other upstream 1732656 22691251 ~ 22695330 (+) True fcer1gl
TU22338 other downstream 57783 24493438 ~ 24499685 (+) True G15065
unassigned_transcript_258 other downstream 605774 25041429 ~ 25041511 (+) True trnal-uaa
unassigned_transcript_259 other downstream 606328 25041983 ~ 25042065 (+) True trnal-uaa_1
unassigned_transcript_260 other downstream 606882 25042537 ~ 25042619 (+) True trnal-uaa_2
unassigned_transcript_261 other downstream 607535 25043190 ~ 25043271 (+) True trnal-uaa_3

Expression Profile