RNA id: XR_006247863.1


Basic Information

Item Value
RNA id XR_006247863.1
length 133
RNA type snoRNA
GC content 0.38
exon number 1
gene id LOC122328950
representative True

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 12281372 ~ 12281504 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

agGAGGATTGAGAAAGTTAAGCAGCTGCATTTGTTCTGCATTAACTGGTTATAACCTCCTAGAAAAAACACAAGTGCTAATGTGCTCATAATGTTCTGTATGAAGTAGTCACTGCAATACTTGTGTACATGTC

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process

KEGG:

id description
ko00830 Retinol metabolism

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU16942 lncRNA upstream 180246 12100875 ~ 12101126 (+) True G11419
TU16629 lncRNA upstream 662509 11614241 ~ 11618863 (+) True G11207
TU16626 lncRNA upstream 667806 11609251 ~ 11613566 (+) True LOC122328936
XR_006247857.1 lncRNA upstream 670285 11610475 ~ 11611087 (+) False LOC122328936
TU16616 lncRNA upstream 779786 11500389 ~ 11501586 (+) False mast3a
TU17037 lncRNA downstream 56163 12337667 ~ 12339049 (+) True G11505
TU17175 lncRNA downstream 263849 12545353 ~ 12545592 (+) True G11590
TU17178 lncRNA downstream 332871 12614375 ~ 12614596 (+) True G11593
TU17180 lncRNA downstream 334491 12615995 ~ 12621414 (+) True G11595
XR_006252588.1 lncRNA downstream 342325 12623829 ~ 12624952 (+) False LOC122358236
XM_043219222.1 mRNA upstream 165 12278732 ~ 12281207 (+) True rps8a
XM_043262125.1 mRNA upstream 3305 12270887 ~ 12278067 (+) False hectd3
XM_043262126.1 mRNA upstream 3305 12270887 ~ 12278067 (+) False hectd3
XM_043262124.1 mRNA upstream 3305 12270888 ~ 12278067 (+) True hectd3
XM_043255426.1 mRNA upstream 24485 12204405 ~ 12256887 (+) True efna2a
XM_043220644.1 mRNA downstream 52283 12333787 ~ 12336926 (+) True lrrc42
XM_043220645.1 mRNA downstream 52283 12333787 ~ 12336926 (+) False lrrc42
XM_043220887.1 mRNA downstream 74384 12355888 ~ 12359062 (+) False ttpa
XM_043220880.1 mRNA downstream 74389 12355893 ~ 12359062 (+) True ttpa
XM_043260495.1 mRNA downstream 80216 12361720 ~ 12376736 (+) False asph
XR_006247873.1 other upstream 713 12280590 ~ 12280659 (+) True LOC122328989
XR_006247874.1 other upstream 1358 12279911 ~ 12280014 (+) True LOC122328992
XR_006252734.1 other upstream 343782 11908073 ~ 11937590 (+) False pld1a
TU16617 other upstream 775642 11502402 ~ 11505730 (+) False mast3a
TU16613 other upstream 781294 11496360 ~ 11500078 (+) False mast3a
TU17183 other downstream 342319 12623823 ~ 12626387 (+) True LOC122358236
TU17265 other downstream 586479 12867983 ~ 12873145 (+) False rnf152
TU17266 other downstream 586479 12867983 ~ 12873085 (+) False rnf152
TU17566 other downstream 1893860 14175364 ~ 14179615 (+) True G11854
TU17573 other downstream 1893860 14175364 ~ 14179615 (+) False G11854

Expression Profile