RNA id: XR_006252197.1


Basic Information

Item Value
RNA id XR_006252197.1
length 824
lncRNA type inter_gene
GC content 0.43
exon number 3
gene id LOC122355240
representative True

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 14495450 ~ 14497873 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CGCTGCCATTTCTGGGGTTTACTCAGAGACGCACCTGGCatcttaattagtttttttttttaatactacgTATAAATCGACCGCAAATATCACGGGTTAAGACGCGTCGTGCTGGGATGATGGATTGTAGAAGGCGTCGGTTGTACCGAGGCTGGCGGCACGCGAAGCACCTCTGGCCCGTGTGCGGCCGACAGTGTATGTCACGGTGAAGAAAGTGAGGCGAGTTCGCTGTAATTGGCGGGTGTGATCACCGCAGCATAATGCCGCTGTCCTGACAGAGAAGATGTTGGATAAAGGGATAACCTTGAGCGCTGGCGTGACGTGACTTTGCTCTTCTCTTTTACTGCAATTAAGTGGAAGTCTTTGAAAGAAGCTGCAATCCTTCATACTCAAATACCACACCACCATCTGTCTATTTAATCAAATATCTAAGCAAATGTGTACAGATGAATTGAGCTTCAAGTGAGAAGCATGTGCAAGGCCTTGTAGGACTGGGATGCATTCTGGTCAGGCAAGGATAGAGGTGTCAGGCAAACTCAGGTGAAACATTACACTTtatgataaaaagaaaactaaattgaTGTTGATAGCTTAATCGCATCCAGTGCACCGCAAGGGACCCCAACACCCTAGTGGTGCCACTGATCGTGTCAACCCAATCTCATGGATATCTTTGTGGTTTGAtttgtttgaagttaaaaataaatgaataaataaacatgagatGACATGAGTAAAGGTGaaggaacacaaaagaaaatactttaaaaacatgcctcattttttttttttgtctacaaAAATGAAAGTCGGACCCAAATGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU17635 lncRNA upstream 58041 14388985 ~ 14437409 (+) True G11898
TU17630 lncRNA upstream 119700 14371918 ~ 14375750 (+) True G11895
TU17629 lncRNA upstream 123616 14369688 ~ 14371834 (+) True G11894
TU17577 lncRNA upstream 331073 14140050 ~ 14164377 (+) True G11855
TU17578 lncRNA upstream 331073 14140050 ~ 14164377 (+) False G11855
TU17656 lncRNA downstream 61987 14559860 ~ 14603545 (+) True G11914
TU17660 lncRNA downstream 138571 14636444 ~ 14636769 (+) True G11917
TU17661 lncRNA downstream 139716 14637589 ~ 14637805 (+) True G11918
TU17912 lncRNA downstream 251344 14749217 ~ 14749651 (+) False plxdc2a
TU17944 lncRNA downstream 325288 14823161 ~ 14826945 (+) True G12135
XM_043219660.1 mRNA upstream 14602 14461913 ~ 14480848 (+) True lpin2
XM_043219653.1 mRNA upstream 14602 14465469 ~ 14480848 (+) False lpin2
XM_043219618.1 mRNA upstream 33737 14439752 ~ 14461713 (+) True myom1a
XM_043219628.1 mRNA upstream 33737 14439752 ~ 14461713 (+) False myom1a
XM_043218574.1 mRNA upstream 59073 14433128 ~ 14436377 (+) True bag1
XM_043261377.1 mRNA downstream 111881 14609754 ~ 14635684 (+) True yes1
XM_043260467.1 mRNA downstream 145631 14643504 ~ 14668425 (+) True colec12
XM_043260478.1 mRNA downstream 171529 14669402 ~ 14677307 (+) True stam
XM_043257043.1 mRNA downstream 180576 14678449 ~ 14681332 (+) True tmem236
XM_043260008.1 mRNA downstream 185017 14682890 ~ 14709199 (+) True cacnb2b
TU17566 other upstream 315835 14175364 ~ 14179615 (+) True G11854
TU17573 other upstream 315835 14175364 ~ 14179615 (+) False G11854
TU17265 other upstream 1622305 12867983 ~ 12873145 (+) False rnf152
TU17266 other upstream 1622365 12867983 ~ 12873085 (+) False rnf152
TU17183 other upstream 1869063 12623823 ~ 12626387 (+) True LOC122358236
XR_006252462.1 other downstream 278449 14776322 ~ 14782977 (+) False ackr4a
XR_006252465.1 other downstream 278449 14776322 ~ 14782704 (+) False ackr4a
TU18526 other downstream 1769170 16267043 ~ 16268797 (+) True G12531
TU18915 other downstream 2534446 17032319 ~ 17037297 (+) False golim4b
XR_006252905.1 other downstream 2864372 17362245 ~ 17367861 (+) False sppl2

Expression Profile