RNA id: XR_006252375.1


Basic Information

Item Value
RNA id XR_006252375.1
length 1708
lncRNA type inter_gene
GC content 0.45
exon number 2
gene id LOC122356731
representative True

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 8762839 ~ 8765451 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTGtgctcgagagagagagagagagagagagagagagaaggctgATTGTGTGTCTGGGCGTCTGTGTTGAGCTGTGAGCTCTTTGAGACTGTGCATCCAAGAGTGAAAGTAAAAGAGCAGGAGAGCGAGTGAGGAATGACAGAGGAGGCTGAGGCTACGCCGCACACTCGAGCCTCGGAGACGCGCTTTGGACCCGACACCTGCCAAAGCGACGCCACCCTTCTTTTTCTAGCTGTGCGTCCACATGCGCACCCAGCACAGTGCCGGTGAGGTGGGCGTCCCGCTGGCAGGAGGTGGCTGCAGTGGTGGCAACTCAGAGCAGTCACCTGGCTTTGACTCAGACTGTAGCCCCGCTCTGGGACTGGCCGGAGGGGTTAGAGCAGTGCGAGGGGTCATGTCCCATTACTGGAGTCTGGAGAGCCTTCACTCCACCAACGGGTTGGCATGGTGACAGACAAGCCAATGACCGTCAGCCAAGGTAGCACTGATGTCACAAACGGCCACCGCTACCCACGTCAGCTGCAATTTggatgtttttctcattttctgctTTGTCCTAAGAGAGATGGGATGTGACTTTTCCTGTGATGGAGGGAAATAAATGGTGCACTGTGAGCCGGGGGCAATAGCTACAGACATTTCAAACAGCGCTGTCACCTCGTCACGGTCCGCTGACCTCATTACAGCGCTCATATAGCTGATCGTAGAACAgtccgaagaaaaaaaaaacaggagtgACATGTGAGAAACGTGTCGAACTGGATCTTTGTAAGTTTGAACATTAGAAGTGTTTGATGAGAGTTTGTTTATGCACAAATCCCAAGGCTCTTTCTCGGCATCACCAGACAGAAATGGTTTGGGTTCAAGCCAGACTGGACACGCAGAACTCATTCACTAAACTGATAGACTCTCTATTCTAGTGTGGGCCAACAAGAACTGGTTTTTAGTGTAATTACTGACTGGGAGGTCCAcagtatatactgtaatatCTCGAGAAAGCTAGCCATTAGCATTTCCGTTTGTCTCAGTGGCATTTGCTTAGCTGGTGCAGGATACCTCAGAATACTGTGACAGTCTATATCTAGTTTACTTttaaaaggtaacactttagcgacctattatcattattaaccGGATGCTTATTAGAATGCCTATTGTTGTATTAGTAGGTCTACTCACAAatcacatattctgcatgaccacccaatacctaaacttaacaactgtcTAGTCAAAAACAGCGTTATCACAACATGCtactaattttagtttttttttataatatggcGACCTCAAAAGGTATTTAGACacttacagtatttttaatgcattttacaataaaatccAAACCAAGACACAGCACCTGGGAAATAgggaatattttattattaagatattttgtaccaTTTGCCTTTAATACAGTTTCCAACTGTCTTAGAATAGATTCATAGAACCTTTGAATAGTCCCCGGTTGAATGTGGTTTATCAGAACATCTGCCAGTTGCCTAGAGATGTTGGAGGAGGGAACTGGCTACTCACTTTTCTTTCCAAAACTGCCCACAGTGGTTGACAATAATCAAGTCAGGTGATTAAGCTGGGGAAGTTCATCTGAGTGCTCCAGATGTCTAGGCTTTATGATCATGACaccatatttttcacattttatcacTAATTTCTGTGATAAAAGTTATAATTTGCTGCTCTTTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU15319 lncRNA upstream 173765 8587377 ~ 8589074 (+) False G10284
TU15324 lncRNA upstream 173765 8588048 ~ 8589074 (+) True G10284
TU15317 lncRNA upstream 173765 8588495 ~ 8589074 (+) False G10284
TU15298 lncRNA upstream 201326 8560098 ~ 8561513 (+) True G10271
TU15220 lncRNA upstream 234132 8522402 ~ 8528707 (+) False G10226
TU15453 lncRNA downstream 33140 8798591 ~ 8798996 (+) True G10371
TU15463 lncRNA downstream 114491 8879942 ~ 8880453 (+) True G10374
TU15539 lncRNA downstream 164053 8929504 ~ 8930073 (+) True G10431
TU15541 lncRNA downstream 174518 8939969 ~ 8941186 (+) True G10433
TU15556 lncRNA downstream 290272 9055723 ~ 9056245 (+) True G10445
XM_043253247.1 mRNA upstream 100516 8651917 ~ 8662323 (+) True amer3
XM_043222148.1 mRNA upstream 111293 8630412 ~ 8651546 (+) True atr
XM_043258048.1 mRNA upstream 163244 8590241 ~ 8599595 (+) True atp1b3a
XM_043216810.1 mRNA upstream 275935 8443177 ~ 8486904 (+) False clcn2a
XM_043262402.1 mRNA downstream 65369 8830820 ~ 8841734 (+) True LOC122361595
XM_043259139.1 mRNA downstream 82876 8848327 ~ 8877202 (+) False LOC122359011
XM_043259083.1 mRNA downstream 85661 8851112 ~ 8877202 (+) False LOC122359011
XM_043259092.1 mRNA downstream 85665 8851116 ~ 8878100 (+) False LOC122359011
XM_043259112.1 mRNA downstream 85954 8851405 ~ 8877202 (+) False LOC122359011
TU15202 other upstream 655062 8106865 ~ 8107777 (+) True G10212
TU15034 other upstream 1180454 7505591 ~ 7582385 (+) False G10108
TU14783 other upstream 1775720 6986298 ~ 6987119 (+) True G9925
TU14736 other upstream 2070464 6691668 ~ 6692375 (+) True G9889
TU14734 other upstream 2072060 6690372 ~ 6690779 (+) True G9887
XR_006252402.1 other downstream 397160 9162611 ~ 9171915 (+) False olfm3b
TU15832 other downstream 981143 9746594 ~ 9751212 (+) True arpc5a
XR_006247735.1 other downstream 1146177 9911628 ~ 9916861 (+) True znf414
XR_006247736.1 other downstream 1146177 9911628 ~ 9915491 (+) False znf414
TU16308 other downstream 1945679 10711130 ~ 10718194 (+) True G10979

Expression Profile