RNA id: XR_006252487.1


Basic Information

Item Value
RNA id XR_006252487.1
length 745
lncRNA type inter_gene
GC content 0.53
exon number 5
gene id LOC122357472
representative True

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 22786721 ~ 22802473 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTCAGCAGCAGGATGGTTACGGCTGCGATCAGACACCGGTTCAGCGTCACGCCTTCCCACGGCGTCTCGAACTGCGTCAGGTTCTGGATGGACAGCGTCCTGCGTAACGACGCTGCTGTACGGGCGACAAAACACAGAAGACATACTGGCACCGGTGAGCGGATGTTCCCGTGCGATCATCTTTGGGACCTGCTGGACGTTTGGAGATTCCTGCGGGACACACGAGGGCTATTAATAGAACGGACAAGCTGAGCGCTCGATAAACCAGTCCTCGTCCCAGGACACAAGACTGCGCAGATGGGCCGCAAAAGCAGTGCTGTGATCTTTGGCAAGGGCAAGGAGCCGGTTTGGAGCAGAGGGAGAGAGGAGCAGAATACATAAGTGCAAAACTAAATAAGGAGGTGCATCAAAGAGAGGCTGTTCTCCAGACGTCTGCGTGAAGAGGAAATGAGTGTCATCTCAACTCTGCTCTCAGGACTCTGTTCAGACGATCTACTGCAGAAACACAACACGTGTGATCTGGAACGAACACCTTCTCTACACGGTCTACTCAATTAAAGCTGGTTTTAAACACAAGAACAGATCCTGAGTCAACGGCCCCTAGGAAGCATTAGACTGCGAGACACTCGCTGGAGTTTGGAAcagatcctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtgtgtgtgtgtgtgtgtgttcgtgcacgttgtgttccacaga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU21543 lncRNA upstream 708 22742427 ~ 22786013 (+) True G14578
TU21492 lncRNA upstream 9718 22776240 ~ 22777003 (+) True G14553
TU21520 lncRNA upstream 115927 22633529 ~ 22670794 (+) False LOC122327931
TU21518 lncRNA upstream 115927 22643403 ~ 22670794 (+) False LOC122327931
TU21485 lncRNA upstream 135878 22643795 ~ 22650843 (+) True G14549
TU21556 lncRNA downstream 10793 22813266 ~ 22829545 (+) True LOC122328317
XR_006247781.1 lncRNA downstream 10942 22813415 ~ 22829492 (+) False LOC122328317
TU21569 lncRNA downstream 45440 22847913 ~ 22879465 (+) True G14589
TU21567 lncRNA downstream 57711 22860184 ~ 22879465 (+) False G14589
TU21584 lncRNA downstream 200731 23003204 ~ 23005138 (+) False LOC122324535
XM_043219140.1 mRNA upstream 1875 22780823 ~ 22784846 (+) True sf3a2
XM_043220650.1 mRNA upstream 12965 22770549 ~ 22773756 (+) True tpgs1
XM_043224502.1 mRNA upstream 29048 22752753 ~ 22757673 (+) True si:dkeyp-68b7.5
XM_043224512.1 mRNA upstream 29048 22752756 ~ 22757673 (+) False si:dkeyp-68b7.5
XM_043216715.1 mRNA upstream 35191 22730924 ~ 22751530 (+) True si:dkeyp-68b7.12
XM_043223952.1 mRNA downstream 30595 22833068 ~ 22870972 (+) True LOC122328301
XM_043222610.1 mRNA downstream 123840 22926313 ~ 22937828 (+) True pias4b
XM_043219179.1 mRNA downstream 136314 22938787 ~ 22946858 (+) True map2k2b
XM_043264291.1 mRNA downstream 156513 22958986 ~ 22998516 (+) False tcf3a
XM_043264274.1 mRNA downstream 156514 22958987 ~ 22998516 (+) False tcf3a
TU21525 other upstream 91391 22691251 ~ 22695330 (+) True fcer1gl
unassigned_transcript_253 other upstream 857902 21928747 ~ 21928819 (+) True trnam-cau_1
TU21370 other upstream 925279 21860891 ~ 21861442 (+) True G14471
TU21151 other upstream 1070434 21715355 ~ 21716287 (+) False ccl20a.3
TU21079 other upstream 1304403 21481676 ~ 21482318 (+) False LOC122354659
TU21973 other downstream 742633 23545106 ~ 23547974 (+) True G14831
unassigned_transcript_256 other downstream 934578 23737051 ~ 23737122 (+) True trnaw-cca_1
XR_006247041.1 other downstream 1133448 23935921 ~ 23938943 (+) True LOC122323670
TU22269 other downstream 1281365 24083838 ~ 24088441 (+) False LOC122327442
TU22338 other downstream 1690965 24493438 ~ 24499685 (+) True G15065

Expression Profile