RNA id: XR_006252552.1


Basic Information

Item Value
RNA id XR_006252552.1
length 557
lncRNA type inter_gene
GC content 0.38
exon number 3
gene id LOC122357958
representative True

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 17610150 ~ 17612100 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ttttttttttgcaaaaggtCCCACTTTACGTAATGGTCCTACATTTTCTCTTGTAAAGTAGGAGCAAAATGGCAGACAATAATGTTGGAGTGAAATATTCCACAAATTGATCCTCCTAGGGATGAGTTCTTGTACgcaaatataaaacatctatTTCTCCATAGGCAGGTcatttgacttaaaaaaaaaaaaacttttccttCTAAAATATAGTACATTTACTGTCGATAGTTGGTAgtctttaaaactaaaaccgtGATAGAGGGAAAGCTTTTCTTGTTCTGAGACGCCTCCTCTACCGAGCTTTCATTGCGTCTGTATTCGGTTCATTACGGTAGTGTTAGTGACATACGCATTATGGGCAAAGACGTCAAAAAGTTTGTCAGTAGGTCGGTTTGCTTCCTTTAACACAATACCTGCTTACAAAGTATCAAAGAGGACAAAAGTCTATGCCTGGGTCAGATTGTTCTTCATTTGTTATCAGCTAAGATAGAGGACTTTGACCTACACCTCACACCTCGTAGGTCCTTCTCAATCAACAGTAGCCATGAAGACTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU19267 lncRNA upstream 80760 17527177 ~ 17529390 (+) True G13049
TU19266 lncRNA upstream 80760 17529001 ~ 17529390 (+) False G13049
TU19305 lncRNA upstream 129656 17480223 ~ 17480494 (+) True G13076
TU19304 lncRNA upstream 130048 17479724 ~ 17480102 (+) True G13075
TU19206 lncRNA upstream 222602 17386062 ~ 17387548 (+) True G13007
TU19350 lncRNA downstream 63972 17676072 ~ 17678382 (+) True G13112
TU19359 lncRNA downstream 87489 17699589 ~ 17699825 (+) True G13121
TU19339 lncRNA downstream 93896 17705996 ~ 17768737 (+) True G13101
TU19420 lncRNA downstream 258178 17870278 ~ 17871416 (+) False nedd8l
TU19432 lncRNA downstream 267459 17879559 ~ 17881219 (+) True G13175
XM_043253189.1 mRNA upstream 72337 17536513 ~ 17537813 (+) True cbln13
XM_043253119.1 mRNA upstream 85381 17518812 ~ 17524769 (+) True parp2
XM_043255265.1 mRNA upstream 98335 17508786 ~ 17511815 (+) True sdr39u1
XM_043255276.1 mRNA upstream 98335 17508786 ~ 17511815 (+) False sdr39u1
XM_043221436.1 mRNA upstream 104028 17501343 ~ 17506122 (+) True ltb4r2b
XM_043257641.1 mRNA downstream 19264 17631364 ~ 17652724 (+) True LOC122357951
XM_043258476.1 mRNA downstream 70404 17682504 ~ 17687392 (+) False apol1
XM_043258470.1 mRNA downstream 70414 17682514 ~ 17687392 (+) False apol1
XM_043258461.1 mRNA downstream 70659 17682759 ~ 17687392 (+) True apol1
XM_043258342.1 mRNA downstream 75741 17687841 ~ 17694911 (+) False si:rp71-1g18.13
TU19349 other upstream 2058 17607252 ~ 17608092 (+) True G13111
TU19352 other upstream 42234 17566841 ~ 17567916 (+) True G13114
XR_006252905.1 other upstream 242289 17362245 ~ 17367861 (+) False sppl2
TU18915 other upstream 572853 17032319 ~ 17037297 (+) False golim4b
TU18526 other upstream 1341353 16267043 ~ 16268797 (+) True G12531
XR_006247303.1 other downstream 167239 17779339 ~ 17782364 (+) False LOC122325453
TU19377 other downstream 172079 17784179 ~ 17816764 (+) True G13137
XR_006247815.1 other downstream 2804103 20416203 ~ 20429345 (+) False crlf1a
XR_006247459.1 other downstream 2855168 20467268 ~ 20472616 (+) False gbp2
TU20479 other downstream 2869564 20481664 ~ 20485218 (+) True G13882

Expression Profile