RNA id: XR_006252712.1


Basic Information

Item Value
RNA id XR_006252712.1
length 350
lncRNA type inter_gene
GC content 0.47
exon number 4
gene id LOC122359521
representative True

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 11116997 ~ 11120787 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GGTTAATTTGCAAACCGCCTTGCACGTTGATCGTCAGCATAGGATAATGTTTTTGCTAATGTTTTTAAACGGCTCGCGTTGTTACCAGGGAAGCCAGCTTGAAGCGGACGCGAAAAACAATTCGGAAGTCTCTTCTGTCGGTCATTGCTGTGGTGTCGGGATACGTGGAGGAACTCGATGACAAGTTTAAGGAGTACCTAAAGAATGAACTCTGGCTGGTGGAGttttatgcGCCATGGTGTGCATACTGTCACACGTTTGAGCCGATATGGCAAGAAGTCGGTGCAGAGCTGAAGAGTATGGGCTCTCCTGTTAATGTGGGCAAGATTGATACCACAGAGCACACAAGT

Function

GO:

id name namespace
GO:0045454 cell redox homeostasis biological_process
GO:0006662 glycerol ether metabolic process biological_process
GO:0001654 eye development biological_process
GO:0016021 integral component of membrane cellular_component
GO:0015035 protein disulfide oxidoreductase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006252710.1 lncRNA downstream 12405 11101522 ~ 11104592 (-) True LOC122359508
TU16650 lncRNA downstream 12405 11101541 ~ 11104592 (-) False LOC122359508
TU16517 lncRNA downstream 138717 10952927 ~ 10978280 (-) True G11118
TU16514 lncRNA downstream 198308 10916071 ~ 10918689 (-) True G11115
TU16507 lncRNA downstream 214454 10897549 ~ 10902543 (-) False LOC122359462
TU16666 lncRNA upstream 26461 11147248 ~ 11150504 (-) True G11234
TU16669 lncRNA upstream 45180 11165967 ~ 11167399 (-) True G11237
XR_006252708.1 lncRNA upstream 47116 11167903 ~ 11170232 (-) True LOC122359499
TU16689 lncRNA upstream 172428 11293215 ~ 11300016 (-) True G11246
TU16702 lncRNA upstream 214944 11335731 ~ 11339597 (-) False trnau1apb
XM_043259411.1 mRNA downstream 54024 10223331 ~ 11062973 (-) True tox
XM_043259774.1 mRNA downstream 214372 10897554 ~ 10902625 (-) True LOC122359462
XM_043259791.1 mRNA downstream 227724 10864071 ~ 10889273 (-) True col15a1b
XM_043259526.1 mRNA downstream 255402 10831110 ~ 10861595 (-) True LOC122359216
XM_043259254.1 mRNA downstream 390151 10710965 ~ 10726846 (-) True xirp1
XM_043259645.1 mRNA upstream 34475 11155262 ~ 11159313 (-) True LOC122359349
XM_043261904.1 mRNA upstream 85657 11206444 ~ 11227249 (-) False slc12a7a
XM_043261896.1 mRNA upstream 85657 11206444 ~ 11227248 (-) True slc12a7a
XM_043261925.1 mRNA upstream 85657 11206444 ~ 11227247 (-) False slc12a7a
XM_043261914.1 mRNA upstream 85657 11206444 ~ 11227246 (-) False slc12a7a
TU16480 other downstream 255443 10767974 ~ 10861554 (-) False LOC122359216
TU16500 other downstream 313709 10800716 ~ 10803288 (-) True G11105
TU16478 other downstream 333046 10769515 ~ 10783951 (-) False LOC122359216
TU16485 other downstream 352106 10758028 ~ 10764891 (-) True G11102
unassigned_transcript_206 other downstream 727374 10389551 ~ 10389623 (-) True trnak-cuu_1
TU16716 other upstream 214944 11335731 ~ 11339597 (-) False trnau1apb
XR_006253162.1 other upstream 261319 11382106 ~ 11405700 (-) False kcnn1a
XR_006253161.1 other upstream 261319 11382106 ~ 11405697 (-) False kcnn1a
TU16731 other upstream 321631 11442418 ~ 11445113 (-) False cnn2
TU16759 other upstream 327971 11448758 ~ 11449423 (-) False crsp7

Expression Profile