RNA id: unassigned_transcript_188


Basic Information

Item Value
RNA id unassigned_transcript_188
length 75
RNA type tRNA
GC content 0.63
exon number 1
gene id trnag-gcc_4
representative True

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 5977915 ~ 5977989 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

gcggtccttggtggttcagtggtagaattctcgcctgccacgcgggagacccgggttcgattcccggccaatgct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU14472 lncRNA upstream 117963 5852269 ~ 5859952 (+) True G9692
TU14470 lncRNA upstream 145225 5832357 ~ 5832690 (+) True G9690
TU14425 lncRNA upstream 146800 5770058 ~ 5831115 (+) True G9667
TU14431 lncRNA upstream 252899 5724701 ~ 5725016 (+) True G9671
TU14420 lncRNA upstream 260509 5717178 ~ 5717406 (+) True G9663
TU14477 lncRNA downstream 164053 6142042 ~ 6142865 (+) True G9697
TU14570 lncRNA downstream 398154 6376143 ~ 6376597 (+) True G9758
TU14665 lncRNA downstream 524401 6502390 ~ 6502594 (+) True G9825
TU14667 lncRNA downstream 534175 6512164 ~ 6512394 (+) True G9827
TU14674 lncRNA downstream 544816 6522805 ~ 6523467 (+) True G9834
XM_043262112.1 mRNA upstream 139282 5836648 ~ 5838633 (+) True LOC122361161
XM_043223488.1 mRNA upstream 151665 5824154 ~ 5826250 (+) False dusp28
XM_043219558.1 mRNA downstream 257881 6235870 ~ 6239694 (+) True crfb16
XM_043255183.1 mRNA downstream 271059 6249048 ~ 6255573 (+) True mb21d2
XM_043217069.1 mRNA downstream 279562 6257551 ~ 6337572 (+) False fgf12a
XM_043217065.1 mRNA downstream 298027 6276016 ~ 6337572 (+) False fgf12a
XM_043217047.1 mRNA downstream 307933 6285922 ~ 6337572 (+) True fgf12a
unassigned_transcript_187 other upstream 3129 5974715 ~ 5974786 (+) True trnag-gcc_3
unassigned_transcript_186 other upstream 6322 5971519 ~ 5971593 (+) True trnag-gcc_2
unassigned_transcript_185 other upstream 8191 5969650 ~ 5969724 (+) True trnag-gcc_1
TU14467 other upstream 151629 5823993 ~ 5826286 (+) False dusp28
TU14373 other upstream 368639 5608327 ~ 5609276 (+) True G9630
unassigned_transcript_189 other downstream 3174 5981163 ~ 5981233 (+) True trnag-gcc_5
unassigned_transcript_190 other downstream 14099 5992088 ~ 5992158 (+) True trnag-gcc_6
unassigned_transcript_191 other downstream 20154 5998143 ~ 5998217 (+) True trnag-gcc_7
unassigned_transcript_192 other downstream 22626 6000615 ~ 6000689 (+) True trnag-gcc_8
unassigned_transcript_193 other downstream 26693 6004682 ~ 6004756 (+) True trnag-gcc_9