RNA id: unassigned_transcript_199



Basic Information


Item Value
RNA id unassigned_transcript_199
length 75
RNA type tRNA
GC content 0.57
exon number 1
gene id trnag-gcc_15
representative True

Chromosome Information


Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 6038306 ~ 6038380 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


gcggtccttggtggttcagtggtagaattctcgcctgccacgcgggagacccgggttcgattcccggccaatgct

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU14472 lncRNA upstream 178354 5852269 ~ 5859952 (+) True G9692
TU14470 lncRNA upstream 205616 5832357 ~ 5832690 (+) True G9690
TU14425 lncRNA upstream 207191 5770058 ~ 5831115 (+) True G9667
TU14431 lncRNA upstream 313290 5724701 ~ 5725016 (+) True G9671
TU14420 lncRNA upstream 320900 5717178 ~ 5717406 (+) True G9663
TU14477 lncRNA downstream 103662 6142042 ~ 6142865 (+) True G9697
TU14570 lncRNA downstream 337763 6376143 ~ 6376597 (+) True G9758
TU14665 lncRNA downstream 464010 6502390 ~ 6502594 (+) True G9825
TU14667 lncRNA downstream 473784 6512164 ~ 6512394 (+) True G9827
TU14674 lncRNA downstream 484425 6522805 ~ 6523467 (+) True G9834
XM_043262112.1 mRNA upstream 199673 5836648 ~ 5838633 (+) True LOC122361161
XM_043223488.1 mRNA upstream 212056 5824154 ~ 5826250 (+) False dusp28
XM_043219558.1 mRNA downstream 197490 6235870 ~ 6239694 (+) True crfb16
XM_043255183.1 mRNA downstream 210668 6249048 ~ 6255573 (+) True mb21d2
XM_043217069.1 mRNA downstream 219171 6257551 ~ 6337572 (+) False fgf12a
XM_043217065.1 mRNA downstream 237636 6276016 ~ 6337572 (+) False fgf12a
XM_043217047.1 mRNA downstream 247542 6285922 ~ 6337572 (+) True fgf12a
unassigned_transcript_198 other upstream 4829 6033403 ~ 6033477 (+) True trnag-gcc_14
unassigned_transcript_197 other upstream 6866 6031366 ~ 6031440 (+) True trnag-gcc_13
unassigned_transcript_196 other upstream 11358 6026874 ~ 6026948 (+) True trnag-gcc_12
unassigned_transcript_195 other upstream 17266 6020966 ~ 6021040 (+) True trnag-gcc_11
unassigned_transcript_194 other upstream 29898 6008334 ~ 6008408 (+) True trnag-gcc_10
unassigned_transcript_200 other downstream 11572 6049952 ~ 6050026 (+) True trnag-gcc_16
unassigned_transcript_201 other downstream 39010 6077390 ~ 6077464 (+) True trnag-gcc_17
unassigned_transcript_202 other downstream 71193 6109573 ~ 6109647 (+) True trnag-gcc_18
unassigned_transcript_203 other downstream 75257 6113637 ~ 6113707 (+) True trnag-gcc_19
unassigned_transcript_204 other downstream 182046 6220426 ~ 6220500 (+) True trnag-gcc_20