RNA id: unassigned_transcript_201


Basic Information

Item Value
RNA id unassigned_transcript_201
length 75
RNA type tRNA
GC content 0.53
exon number 1
gene id trnag-gcc_17
representative True

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 6077390 ~ 6077464 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

gcggtccttggtggttcagtggtagaattctcgcctgccacgcgggagacccgggttcgattcccggccaatgct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU14472 lncRNA upstream 217438 5852269 ~ 5859952 (+) True G9692
TU14470 lncRNA upstream 244700 5832357 ~ 5832690 (+) True G9690
TU14425 lncRNA upstream 246275 5770058 ~ 5831115 (+) True G9667
TU14431 lncRNA upstream 352374 5724701 ~ 5725016 (+) True G9671
TU14420 lncRNA upstream 359984 5717178 ~ 5717406 (+) True G9663
TU14477 lncRNA downstream 64578 6142042 ~ 6142865 (+) True G9697
TU14570 lncRNA downstream 298679 6376143 ~ 6376597 (+) True G9758
TU14665 lncRNA downstream 424926 6502390 ~ 6502594 (+) True G9825
TU14667 lncRNA downstream 434700 6512164 ~ 6512394 (+) True G9827
TU14674 lncRNA downstream 445341 6522805 ~ 6523467 (+) True G9834
XM_043262112.1 mRNA upstream 238757 5836648 ~ 5838633 (+) True LOC122361161
XM_043223488.1 mRNA upstream 251140 5824154 ~ 5826250 (+) False dusp28
XM_043219558.1 mRNA downstream 158406 6235870 ~ 6239694 (+) True crfb16
XM_043255183.1 mRNA downstream 171584 6249048 ~ 6255573 (+) True mb21d2
XM_043217069.1 mRNA downstream 180087 6257551 ~ 6337572 (+) False fgf12a
XM_043217065.1 mRNA downstream 198552 6276016 ~ 6337572 (+) False fgf12a
XM_043217047.1 mRNA downstream 208458 6285922 ~ 6337572 (+) True fgf12a
unassigned_transcript_200 other upstream 27364 6049952 ~ 6050026 (+) True trnag-gcc_16
unassigned_transcript_199 other upstream 39010 6038306 ~ 6038380 (+) True trnag-gcc_15
unassigned_transcript_198 other upstream 43913 6033403 ~ 6033477 (+) True trnag-gcc_14
unassigned_transcript_197 other upstream 45950 6031366 ~ 6031440 (+) True trnag-gcc_13
unassigned_transcript_196 other upstream 50442 6026874 ~ 6026948 (+) True trnag-gcc_12
unassigned_transcript_202 other downstream 32109 6109573 ~ 6109647 (+) True trnag-gcc_18
unassigned_transcript_203 other downstream 36173 6113637 ~ 6113707 (+) True trnag-gcc_19
unassigned_transcript_204 other downstream 142962 6220426 ~ 6220500 (+) True trnag-gcc_20
unassigned_transcript_205 other downstream 144981 6222445 ~ 6222519 (+) True trnag-gcc_21
TU14569 other downstream 289713 6367177 ~ 6367954 (+) True sst2