RNA id: unassigned_transcript_260


Basic Information

Item Value
RNA id unassigned_transcript_260
length 83
RNA type tRNA
GC content 0.59
exon number 1
gene id trnal-uaa_2
representative True

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 25042537 ~ 25042619 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ACCAGgatggccgagaggttaaggcgttGGACTTAAGATCCAATGGACAAATGTCCTCGTGGGTTCGAACCCCACTCCTGGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU22492 lncRNA upstream 201544 24788885 ~ 24840993 (+) True G15165
TU22524 lncRNA upstream 226107 24813299 ~ 24816430 (+) True G15189
TU22497 lncRNA upstream 244973 24796813 ~ 24797564 (+) True G15169
TU22484 lncRNA upstream 287946 24687556 ~ 24754591 (+) False zcchc2
TU22350 lncRNA upstream 439745 24523424 ~ 24602792 (+) True G15071
TU22581 lncRNA downstream 63084 25105703 ~ 25210816 (+) True G15225
TU22584 lncRNA downstream 63084 25105703 ~ 25169740 (+) False G15225
TU22600 lncRNA downstream 68642 25111261 ~ 25115138 (+) True G15236
TU22605 lncRNA downstream 80681 25123300 ~ 25145006 (+) True G15240
TU22593 lncRNA downstream 106636 25149255 ~ 25157235 (+) True G15233
XM_043264786.1 mRNA upstream 16363 24998780 ~ 25026174 (+) False adcyap1r1a
XM_043264795.1 mRNA upstream 16363 24998967 ~ 25026174 (+) True adcyap1r1a
XM_043264804.1 mRNA upstream 16363 24998975 ~ 25026174 (+) False adcyap1r1a
XM_043264812.1 mRNA upstream 16363 24998976 ~ 25026174 (+) False adcyap1r1a
XM_043264479.1 mRNA upstream 63792 24966026 ~ 24978745 (+) False fyco1b
XM_043265067.1 mRNA downstream 8651 25051270 ~ 25062510 (+) False eef1da
XM_043265118.1 mRNA downstream 8651 25051270 ~ 25062510 (+) False eef1da
XM_043265142.1 mRNA downstream 8651 25051270 ~ 25062510 (+) False eef1da
XM_043265084.1 mRNA downstream 8666 25051285 ~ 25062510 (+) True eef1da
XM_043265076.1 mRNA downstream 8666 25051285 ~ 25062510 (+) False eef1da
unassigned_transcript_259 other upstream 472 25041983 ~ 25042065 (+) True trnal-uaa_1
unassigned_transcript_258 other upstream 1026 25041429 ~ 25041511 (+) True trnal-uaa
TU22338 other upstream 542852 24493438 ~ 24499685 (+) True G15065
TU22269 other upstream 954096 24083838 ~ 24088441 (+) False LOC122327442
XR_006247041.1 other upstream 1103594 23935921 ~ 23938943 (+) True LOC122323670
unassigned_transcript_261 other downstream 571 25043190 ~ 25043271 (+) True trnal-uaa_3
unassigned_transcript_262 other downstream 1124 25043743 ~ 25043825 (+) True trnal-uaa_4
unassigned_transcript_263 other downstream 1777 25044396 ~ 25044478 (+) True trnal-uaa_5
unassigned_transcript_264 other downstream 2331 25044950 ~ 25045032 (+) True trnal-uaa_6
unassigned_transcript_265 other downstream 3442 25046061 ~ 25046143 (+) True trnal-uaa_7