RNA id: unassigned_transcript_271


Basic Information

Item Value
RNA id unassigned_transcript_271
length 83
RNA type tRNA
GC content 0.53
exon number 1
gene id trnal-uaa_13
representative True

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 25049604 ~ 25049686 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ACCAGgatggccgagaggttaaggcgttGGACTTAAGATCCAATGGACAAATGTCCTCGTGGGTTCGAACCCCACTCCTGGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU22492 lncRNA upstream 208611 24788885 ~ 24840993 (+) True G15165
TU22524 lncRNA upstream 233174 24813299 ~ 24816430 (+) True G15189
TU22497 lncRNA upstream 252040 24796813 ~ 24797564 (+) True G15169
TU22484 lncRNA upstream 295013 24687556 ~ 24754591 (+) False zcchc2
TU22350 lncRNA upstream 446812 24523424 ~ 24602792 (+) True G15071
TU22581 lncRNA downstream 56017 25105703 ~ 25210816 (+) True G15225
TU22584 lncRNA downstream 56017 25105703 ~ 25169740 (+) False G15225
TU22600 lncRNA downstream 61575 25111261 ~ 25115138 (+) True G15236
TU22605 lncRNA downstream 73614 25123300 ~ 25145006 (+) True G15240
TU22593 lncRNA downstream 99569 25149255 ~ 25157235 (+) True G15233
XM_043264786.1 mRNA upstream 23430 24998780 ~ 25026174 (+) False adcyap1r1a
XM_043264795.1 mRNA upstream 23430 24998967 ~ 25026174 (+) True adcyap1r1a
XM_043264804.1 mRNA upstream 23430 24998975 ~ 25026174 (+) False adcyap1r1a
XM_043264812.1 mRNA upstream 23430 24998976 ~ 25026174 (+) False adcyap1r1a
XM_043264479.1 mRNA upstream 70859 24966026 ~ 24978745 (+) False fyco1b
XM_043265067.1 mRNA downstream 1584 25051270 ~ 25062510 (+) False eef1da
XM_043265118.1 mRNA downstream 1584 25051270 ~ 25062510 (+) False eef1da
XM_043265142.1 mRNA downstream 1584 25051270 ~ 25062510 (+) False eef1da
XM_043265084.1 mRNA downstream 1599 25051285 ~ 25062510 (+) True eef1da
XM_043265076.1 mRNA downstream 1599 25051285 ~ 25062510 (+) False eef1da
unassigned_transcript_270 other upstream 472 25049050 ~ 25049132 (+) True trnal-uaa_12
unassigned_transcript_269 other upstream 1125 25048397 ~ 25048479 (+) True trnal-uaa_11
unassigned_transcript_268 other upstream 1682 25047840 ~ 25047922 (+) True trnal-uaa_10
unassigned_transcript_267 other upstream 2255 25047267 ~ 25047349 (+) True trnal-uaa_9
unassigned_transcript_266 other upstream 2808 25046714 ~ 25046796 (+) True trnal-uaa_8
unassigned_transcript_272 other downstream 871 25050557 ~ 25050639 (+) True trnal-uaa_14
TU22577 other downstream 121050 25170736 ~ 25175288 (+) True G15224
XR_006253181.1 other downstream 172458 25222144 ~ 25236609 (+) False LOC122362952
TU22800 other downstream 344645 25394331 ~ 25397882 (+) False LOC122327519
TU22814 other downstream 442574 25492260 ~ 25502158 (+) False LOC122362387

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
rainbow trout (Oncorhynchus mykiss) trnal-uaa-57 True 83 mRNA 0.53 1 NC_048582.1 44283492 ~ 44283574 (-)