RNA id: XR_006252187.1


Basic Information

Item Value
RNA id XR_006252187.1
length 539
lncRNA type inter_gene
GC content 0.47
exon number 3
gene id LOC122355197
representative True

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 382572 ~ 385022 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AGACTGGGAAGTAATCCTATATATATTCGTTGTTCGCCCCGCACTTCCTTAAAGGCTTCCTTCTCGGCTCTCTTGACATTGTGtcacacaaacaaagaaaaatgccTGAAGAAGTTCCTGCTCAGTGCAAGGCTCCCAAAGAAGAGCTGGATAAATGTGTTCAGGGGAAGGGTGCGGAGGGCTGTAAGGAGCTGCTGGAAGCTTTTGAGGCCTGTGTGAAGGGGGCCACGGCAGCCTCGTGAGGGGACACGCATTTACATGTCCATCCTTTCTGGGTCCTCCGGCGTCCTTGCATTCCCTCACATCGCACTGGACCGAACCATTCTAAGGACAGCGAGAGGGGTGCGAGTGCTGGAAAGCAGCGGAAATTGTTTATTTCGATCCTGGGAAGTCTTGTTGGTGTCCCTCATGTCGTCCGTGATATCTGTAACTGTGGAAGAGAGAAGAACccagttttattattgtttcccAGAtttcacactgtaaaaaaaaagcgcaTTTCATTCGactttgaataaattattataattgtttcttta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006252193.1 lncRNA downstream 183705 197400 ~ 198867 (-) True LOC122355220
XR_006252194.1 lncRNA downstream 185179 196901 ~ 197393 (-) True LOC122355221
TU125201 lncRNA downstream 211286 168124 ~ 171286 (-) False LOC122355191
TU125183 lncRNA downstream 241491 140100 ~ 141081 (-) True G84487
TU125191 lncRNA downstream 292998 88055 ~ 89574 (-) True G84492
XR_006252217.1 lncRNA upstream 869 385889 ~ 386457 (-) True LOC122355423
TU125292 lncRNA upstream 93003 478023 ~ 478431 (-) True G84547
TU125294 lncRNA upstream 101661 486681 ~ 486965 (-) False LOC122355759
TU125299 lncRNA upstream 111944 496964 ~ 498001 (-) False zgc:163073
TU125427 lncRNA upstream 158226 543246 ~ 552443 (-) True ifnphi4
XM_043254214.1 mRNA downstream 1405 367950 ~ 381167 (-) False brsk1a
XM_043254217.1 mRNA downstream 1408 367950 ~ 381164 (-) False brsk1a
XM_043254211.1 mRNA downstream 1412 363606 ~ 381160 (-) False brsk1a
XM_043254216.1 mRNA downstream 1414 363606 ~ 381158 (-) False brsk1a
XM_043254209.1 mRNA downstream 1415 363606 ~ 381157 (-) True brsk1a
XM_043253631.1 mRNA upstream 22336 407356 ~ 434276 (-) False mapta
XM_043253642.1 mRNA upstream 22336 407356 ~ 426631 (-) False mapta
XM_043253636.1 mRNA upstream 22336 407356 ~ 426631 (-) False mapta
XM_043253639.1 mRNA upstream 22336 407356 ~ 426631 (-) False mapta
XM_043253632.1 mRNA upstream 22336 407356 ~ 426631 (-) False mapta
XR_006252248.1 other downstream 22260 340273 ~ 360312 (-) False prr12a
XR_006252247.1 other downstream 22260 340273 ~ 360312 (-) False prr12a
XR_006252246.1 other downstream 22260 340273 ~ 360312 (-) False prr12a
TU125247 other downstream 61312 319330 ~ 321260 (-) True G84521
TU125176 other downstream 252587 78617 ~ 129985 (-) True G84486
TU125629 other upstream 506112 891132 ~ 897030 (-) False dlx4b
TU125823 other upstream 1485753 1870773 ~ 1947412 (-) False ank3b
unassigned_transcript_1807 other upstream 2108690 2493710 ~ 2493791 (-) True trnal-uag_3
TU126277 other upstream 2382888 2767908 ~ 2781353 (-) True G85232
TU126462 other upstream 2705765 3090785 ~ 3092413 (-) False LOC122355711

Expression Profile