RNA id: XM_043253275.1


Basic Information

Item Value
RNA id XM_043253275.1
length 960
RNA type mRNA
GC content 0.45
exon number 7
gene id zgc:163073
representative True

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 496964 ~ 500219 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ACTGCAGTCAAACATTGAAATAAGGTTTCGTTTTTGTCCATTTGCTTGTTGTGATCGCGCCACTATGGCTTCACAAAAGCCAGAGCccaaaaaagaagcaaagccaGTCCCAGCTGCAAAAGAAGAACCAGCTCCTGAAGCAGCAGAACGAGCATCAACAGCCGATCCTAAACCAACAACTCCAGCACCGGAAAAGGCTGCTTCTGCCCCAACTACAACACCAGAGTCAACTCCAAAACCTCCAGAAAAAGCCAGCCCTACACCTGGAGCGTCTCCAGTGGAAGCAGCCCCAGAACCAGCCAAAACACAGGCTTCTCCTCCAAATCCGGCTTTTAAATATGATCCTGCTGCTGCAggtAATCTCAGTGCTGAACAGCTTGAAGAGTTCAAAGAAGCTTTCCTGTTGTTTGCCAGGACTCCCTCGGGGGAGATGAAGATTTCACTAGCTCAGTGTGGAGATGTGATGAGAGCTTTGGGTCAGAACCCAACCAATGCTGAAGTTTTGAATGTTCTCGGAAAACCAAAGCCTGAAGAAATGGAATCCAGACTGATAGACTTTGAGACTTTCCTGCCTATGTTTCAACAAGTTTCAAAGTCTACTGAAAAGGGCACATTTGAAGATTTTGTGGAAGGCCTTCGAGTCTTTGACAAAGAAAGCAATGGAACAGTCATGGGGGCTGAACTTCGCCATGTGCTCGCTACTTTGGGTGAAAGATTGTCTGAGGGTGAAGTGGATCAGTTGCTGGCAGGACAAGAAGACACAAATGGTTGCATTAACTATGAAGCTTTTATAAAACATGTCATGACTAGCTGAGGGAACTCTTCTGGTACAGCAGCAGCTTCACATGCACCGCCAGCGGAGGTTAACTGAAGGTCATGTGTGAGAATTGTCATCAGTGATTGATAAAGTTATCACTGAATCAAAaataatgcaactttttttttttttttttttttttt

Function

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K12751 MYL6; myosin light chain 6

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU125294 lncRNA downstream 10050 486681 ~ 486965 (-) False LOC122355759
TU125292 lncRNA downstream 18584 478023 ~ 478431 (-) True G84547
XR_006252217.1 lncRNA downstream 110558 385889 ~ 386457 (-) True LOC122355423
TU125268 lncRNA downstream 111993 382605 ~ 385022 (-) False LOC122355197
XR_006252187.1 lncRNA downstream 111995 382572 ~ 385020 (-) True LOC122355197
TU125427 lncRNA upstream 43027 543246 ~ 552443 (-) True ifnphi4
TU125489 lncRNA upstream 109848 610067 ~ 611847 (-) True G84654
TU125504 lncRNA upstream 159870 660089 ~ 663746 (-) True G84666
TU125550 lncRNA upstream 259706 759925 ~ 789003 (-) True G84700
XR_006252207.1 lncRNA upstream 266435 766654 ~ 769898 (-) True LOC122355303
XM_043254323.1 mRNA downstream 6636 484438 ~ 490379 (-) True LOC122355759
XM_043254322.1 mRNA downstream 19476 469843 ~ 477539 (-) True LOC122355758
XM_043253221.1 mRNA downstream 52190 439870 ~ 444825 (-) False LOC122355175
XM_043253220.1 mRNA downstream 52190 439870 ~ 444825 (-) False LOC122355175
XM_043253222.1 mRNA downstream 52190 439870 ~ 444825 (-) True LOC122355175
XM_043253620.1 mRNA upstream 45341 545560 ~ 547322 (-) False ifnphi4
XM_043254316.1 mRNA upstream 123692 623911 ~ 626522 (-) True rbp4
XM_043253647.1 mRNA upstream 140652 640871 ~ 650188 (-) True fra10ac1
XM_043254090.1 mRNA upstream 236429 736648 ~ 745103 (-) True noc3l
XM_043254092.1 mRNA upstream 246048 746267 ~ 762604 (-) False tbc1d12b
XR_006252248.1 other downstream 136703 340273 ~ 360312 (-) False prr12a
XR_006252247.1 other downstream 136703 340273 ~ 360312 (-) False prr12a
XR_006252246.1 other downstream 136703 340273 ~ 360312 (-) False prr12a
TU125247 other downstream 175755 319330 ~ 321260 (-) True G84521
TU125173 other downstream 374248 115719 ~ 122767 (-) False G84485
TU125629 other upstream 390913 891132 ~ 897030 (-) False dlx4b
TU125823 other upstream 1370554 1870773 ~ 1947412 (-) False ank3b
unassigned_transcript_1807 other upstream 1993491 2493710 ~ 2493791 (-) True trnal-uag_3
TU126277 other upstream 2267689 2767908 ~ 2781353 (-) True G85232
TU126462 other upstream 2590566 3090785 ~ 3092413 (-) False LOC122355711

Expression Profile