RNA id: TU125504


Basic Information

Item Value
RNA id TU125504
length 2787
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G84666
representative True

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 660089 ~ 663746 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCGAGGTAagaatctttcatttatttcaactaCTAAAGCTCAAAAGTCATATAAATATGCAAGGTGAAATCTACAGCAGGCATTATTCAAATCGACAACcttgttcaataaataatatggAGGGATATGCTCTTACATTAATGTATCattaacataaaatgtcatcagatttaaaaaaaaaaaaaaaaaaaaaaaatgaaggcagCATGTCCAGAAATTGCTGGTGATGTATCAGTAAACCATTAATAGTGCTTTTAATGACGAAAAACTGACACAACAAGTCAGTGTAAAGTGCTTTTAGGTCAGTTTACACAAAcaggtttaaataaaatgttcaaattaaataaatgtaaagggAAAACACACCCATGTCAGAGCGACTGAATTTCAGAATAGTCCATACTGACAGTCACAGCCGCTTGTAACAACTCACAATAAGTCATCTCTGTGCCAAGACACATGTccgataaataaataagtgtgaCTCATTCTATATCAGGCAAATATTTGTGAAACGAACATGTGCGTATGTCTAAAGTACATAAGGACAGAGTTCAAGTGGTTCATGAAGGTTCAGAACGTATTACTGATTGCATATTTAAGCACATATAATTCAGAATTTACCAGAACAGACCTTAATATGTAGTAGGCAAAAATATACAGACGCACTGTTGACCctgtgttttccttttaaaaaaaataataccagATACAGTACACCGTCAACAACAAAGTGCAAAgggttttaaagggatagtttgtaccaaaaaataaaattgtcgTCGTTTATCGCGTTTATCCTCGTGTCAGTCCAAATTTCCTTCCATGACGGAAAAATTGAGATGTTTGGCAGAATGTTCActctgctcttttccatacaatgaaaacGAGTGGGATGCAATGAGAAACGGCATTTGGCATCATTCACGTCAAGTGGACGATGACAAACAGACCTAAAGAAAAACCACTTCGGTTTCAGTGCTGTCCTCATTCAAATCAACCGCGTGACTTGAAATGGTATGTATTAAATGTGTACTTATTTTGTAGTGTTTATTtccctatttttttaatttcagtcattAAGCATAGGTTCCAATTTATTAGAAGTTATGGAATATGTACGGAATGTATGGAAAAGAATCAAAAAACCATCTCCAAAAACCATACTGCTATGCAAAGGCATGAGTGTGAGAGTAAAAGATTTGGTGATCTTTCGATTGTTATGCTGTCTACTGTACTCTCTATATGATAAAGCAGCACTGTCTCAAAAGTAGtatcttgataaaaaaaaatatctgtcgTCTTCACACAAGAATATTGAATTTTAGGAAACTACAAAACCTCTAAAAAATACTGTCATATACTTGCATACAGTATGGTCCTGATCTCAGACTCTCGATGTATATTGTTAAAGTAATATAGCTTCTTTGGTATCTAATGTAGCAATTATTTGTAGCAAACATAAAAAACGCTTTTTTCATCTCACTATAATACGCAATCAGCTCTTATTTTTTGTGCTGTTATACCACTTCCTTACGGCCACCCCACTGGTGCTGCTAATCACGCACAGCGCTCCCCCCAGACTCCACCACGTGGGTTTTCGGTTGAGGAACAGGAACTGCAGAATGAACGCCAGGACCACGTCCATCGTCCTCATCAGTGCAACAGGCCCTGCTTTCTCGATCTGCAGGGCTTTGGTGAGGAACGTCTGGCCGGCGATGCCGAGCAGCCCGATGGCCATGAGCGTCCACCTGTCCCAGCCGCAGGACGGGACGGTCCATTCGTCCAAGATGAACAAAACAATAACGCACTCCAGGAGCCCCAGAACTGCATAGTACCACACGGAGAGGTAGTAATGAACGCTTTTCCCTATCTTTCTCAGAATGACCATAGTGCAGGCCGCTCCGATCGCCCCTGTGAAGGCGGCCGCCGTGCCTTTTATGTGACTGGTGTAGTCGCCTTCGATCCCAGACAGCTCGCCACCGAAGAGGAAGGGAGGTCTGGCTATCAGTATGACCCCGGTGAGCGTAAACGCGGTAAAAACCACGTCCCATATGGTGCACCTCTCCTTAAGGAAAATCCAAGCCAGTAAGGAGGTGAAGACCGGATTGCTGAACATTATAACTGTGGCATCGGCTAGGGGCATCTGTAGAACCGCGTAATATAACAAGATCATGGCGTTGGAGCCCAGGAACCCTCTGAGGAACAGGTAGATTCGCATACCTCTTGGTCCCAAAAAACcCATACTTGTAATATATCATGGCTGGCATGACAAACAGCATCTGGAAGAAGCACCGTATTGCACTGATTTCGATGGCGTGCATCCCCTCGATTTTCTTCACAAGAAGAGCTGCAGCAGAGAAGAAAACGGATGCTAACAAGGAGTACAGCAGGCCCAGCCCTGGACACGCCGGTTTCTTTTCTGTGGATGAACGTAACGAAACACTTTTACATCCCAGGACAGTGAGAAAAATGATCAGTTTTGAATGCATAAACAAGTATTTGCTGAGAAAAGCCACTAAATGCAAACAATTTAGGGAAATTATCTTTGTGACCAAGGTTGAACAAaactcagatttaaaaaaaatgattgtgaaTTTAAATTTGGCCACCAACCACAAGAAAGGAAATTGACTAAACTGCAAAAATGGCCATTAAATTTCTGTATAACTTCAGGGTTTTACGGCAGAGTTTACAACAAActgattcacaaaaaaaaggcataattgCTCCAATGGTggaaaaataatttagtaatttacatcaaaatttgtgatgtttttttat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU125489 lncRNA downstream 48242 610067 ~ 611847 (-) True G84654
TU125427 lncRNA downstream 107646 543246 ~ 552443 (-) True ifnphi4
TU125299 lncRNA downstream 162088 496964 ~ 498001 (-) False zgc:163073
TU125294 lncRNA downstream 173124 486681 ~ 486965 (-) False LOC122355759
TU125292 lncRNA downstream 181658 478023 ~ 478431 (-) True G84547
TU125550 lncRNA upstream 96179 759925 ~ 789003 (-) True G84700
XR_006252207.1 lncRNA upstream 102908 766654 ~ 769898 (-) True LOC122355303
XR_006252166.1 lncRNA upstream 283281 947027 ~ 979785 (-) False LOC122355070
XR_006252165.1 lncRNA upstream 283281 947027 ~ 979785 (-) True LOC122355070
TU125630 lncRNA upstream 283368 947114 ~ 979785 (-) False LOC122355070
XM_043253647.1 mRNA downstream 9901 640871 ~ 650188 (-) True fra10ac1
XM_043254316.1 mRNA downstream 33567 623911 ~ 626522 (-) True rbp4
XM_043253620.1 mRNA downstream 112767 545560 ~ 547322 (-) False ifnphi4
XM_043253275.1 mRNA downstream 159870 497015 ~ 500219 (-) True zgc:163073
XM_043254323.1 mRNA downstream 169710 484438 ~ 490379 (-) True LOC122355759
XM_043254090.1 mRNA upstream 72902 736648 ~ 745103 (-) True noc3l
XM_043254092.1 mRNA upstream 82521 746267 ~ 762604 (-) False tbc1d12b
XM_043254091.1 mRNA upstream 82521 746267 ~ 762603 (-) True tbc1d12b
XM_043254315.1 mRNA upstream 114755 778501 ~ 797724 (-) True LOC122355750
XM_043253402.1 mRNA upstream 135075 798821 ~ 802802 (-) False abi3b
XR_006252248.1 other downstream 299777 340273 ~ 360312 (-) False prr12a
XR_006252247.1 other downstream 299777 340273 ~ 360312 (-) False prr12a
XR_006252246.1 other downstream 299777 340273 ~ 360312 (-) False prr12a
TU125247 other downstream 338829 319330 ~ 321260 (-) True G84521
TU125173 other downstream 537322 115719 ~ 122767 (-) False G84485
TU125629 other upstream 227386 891132 ~ 897030 (-) False dlx4b
TU125823 other upstream 1207027 1870773 ~ 1947412 (-) False ank3b
unassigned_transcript_1807 other upstream 1829964 2493710 ~ 2493791 (-) True trnal-uag_3
TU126277 other upstream 2104162 2767908 ~ 2781353 (-) True G85232
TU126462 other upstream 2427039 3090785 ~ 3092413 (-) False LOC122355711

Expression Profile