RNA id: TU125629



Basic Information


Item Value
RNA id TU125629
length 1670
RNA type TUCP
GC content 0.47
exon number 2
gene id dlx4b
representative False

Chromosome Information


Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 889710 ~ 897517 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


TCTCTTCGCGGGCGGTTAGCTCCGAATCGTTTACGCAAAGGTCGCGTTAAAATTCGAAGATCGTTATTACGCGACGTGATCGATATCAGAGCTCGGCATAATTCGATAGCAAATGCTCATCAACTTCATTTAGCTCTCCCCGGTGTCGAGTGACACACCAATCAGCGCGCGCTCTCGCGGAGCGCGAGTCAGTCAGAAGCACGCAGGACCGCGAGCCCGAGGTGACTCCGATATTGCGCGGTTTAAAATCGCGTTGGTCTGTGAGATTCGATGCGGTGCGGCTTTTTTTAGGAAATACCTATTCGATCCCTATCTCGCGGCCGTTTCTTTTATCCCTGATTATTTTGGGATGGATCCGGTTCGAGCTCTTTTCGGTGCGCGGTGAACGTTCAATGCAGCACTCGGACCATCATCGGGCTTTATGGACTTGACCGTTAATGATGTCTATGGGTTTCATGTCTGATACGCTGAATAGTCCAGATCCTTCCAAATCGGCGTTTTTAGAGTTCGGCCACGGGCTTGCGAGCAACCAGCAGCATTTATCCGGATTCGCGCACAACCTTTACCCGGTTCATGGATTGCACTCCGGCGGACACCTCCAGCACGACGCTCCCTATCCTTCCAGCGCGTCCCATTACAGCCGGCCGCTGGGATACGCCTACCCCGGGCCGGTGAGCGCTCCCGCTGCGGGCGCCTACGTGCCTTACCAGCCAAACAACCACAGCAGCGCTCTGGCGCACGCGAGGGCCGAGGAGACGAGTGAAAATATGGTTTCAAAACAAGCGCTCCAAGTATAAGAAGATCATGAAGCACGGCTCCAGTGGACCTGAAGGGGAGCTGCTTCACACCACCTCCTCGTCCTCTCCATGCTCTCCGGGTCTCTCTCAGCTCTGGGAGGTCTCTATGGCCAACAAAGTGCCACCCATGCATCCCAGCAGTTATATGAACAATTACGGGCACTGGTATCCCCCGCACCACCAGGATCCTGCGCCCAGACCTCAGATGATGTGATTAAAATCGGAAACGCAGAGCCAGAGAGACTCTAACCCgtgaaggttttttttcctttacggTCTTCATATGTGTTTTATTGCTTAGTGTGTTTGAAAGGACTGTGTTTTCCTCCCCCTGACTCCCCCCATATTACACTTCAGTAGCTTTTCGACCTTTTCAGATCTTTTACAATGTGCTTGAAATAAAGGATTTATGAAAGGACGAAAATGTTATGAATGATTTATAgaaattttgatatttatttttttttacgtaaatTGTAAGGTCCTGGCGCGTTCGCGTGGTGTGTATAGCCTATTTAAAACGATCttgttttacaataatattgttattaataaacgCGAGTGAAATAGATCTATAAAGGCCCCTAAATTAGCCTTCTGGAATACATTTTTGAGATTAAACGAAGCTGCCAAAATACGTTATTACGCCAATGTTATGAATtcatcattaataaattaatccaCAGATGTTCACTCAGCGTCCGACTTCTAGAcattttcgtttttgtttttttgggggggggttttTACGTTGTCAAAGTGTGGGAAAACTAGGTTGagatttatgaattatttatgatCAAGGCACACGGATGTAAGATGATCTGCTTTTCTATTCgactatattttttttagatacagGCTATAGGCAGg

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU125550 lncRNA downstream 102129 759925 ~ 789003 (-) True G84700
XR_006252207.1 lncRNA downstream 121234 766654 ~ 769898 (-) True LOC122355303
TU125504 lncRNA downstream 227386 660089 ~ 663746 (-) True G84666
TU125489 lncRNA downstream 279285 610067 ~ 611847 (-) True G84654
TU125427 lncRNA downstream 338689 543246 ~ 552443 (-) True ifnphi4
XR_006252166.1 lncRNA upstream 49997 947027 ~ 979785 (-) False LOC122355070
XR_006252165.1 lncRNA upstream 49997 947027 ~ 979785 (-) True LOC122355070
TU125630 lncRNA upstream 50084 947114 ~ 979785 (-) False LOC122355070
TU125692 lncRNA upstream 167903 1064933 ~ 1065345 (-) True G84793
XR_006252226.1 lncRNA upstream 251909 1148939 ~ 1172741 (-) True LOC122355531
XM_043253100.1 mRNA downstream 23255 837814 ~ 867877 (-) True itga3b
XM_043253101.1 mRNA downstream 23256 838470 ~ 867876 (-) False itga3b
XM_043253402.1 mRNA downstream 88330 798821 ~ 802802 (-) False abi3b
XM_043253399.1 mRNA downstream 88332 798821 ~ 802800 (-) True abi3b
XM_043253400.1 mRNA downstream 88512 798821 ~ 802620 (-) False abi3b
XM_043254251.1 mRNA upstream 85970 983000 ~ 990248 (-) True kat7b
XM_043254072.1 mRNA upstream 102157 999187 ~ 1005075 (-) True g6pc1a.1
XM_043254069.1 mRNA upstream 112957 1009987 ~ 1017230 (-) True aarsd1
XM_043253753.1 mRNA upstream 148386 1045416 ~ 1056434 (-) False a1cf
XM_043253750.1 mRNA upstream 148386 1045416 ~ 1056434 (-) False a1cf
XR_006252248.1 other downstream 530820 340273 ~ 360312 (-) False prr12a
XR_006252247.1 other downstream 530820 340273 ~ 360312 (-) False prr12a
XR_006252246.1 other downstream 530820 340273 ~ 360312 (-) False prr12a
TU125247 other downstream 569872 319330 ~ 321260 (-) True G84521
TU125173 other downstream 768365 115719 ~ 122767 (-) False G84485
TU125823 other upstream 973743 1870773 ~ 1947412 (-) False ank3b
unassigned_transcript_1807 other upstream 1596680 2493710 ~ 2493791 (-) True trnal-uag_3
TU126277 other upstream 1870878 2767908 ~ 2781353 (-) True G85232
TU126462 other upstream 2193755 3090785 ~ 3092413 (-) False LOC122355711
TU126480 other upstream 2361501 3258531 ~ 3299688 (-) False G85366

Expression Profile