RNA id: XM_043253023.1


Basic Information

Item Value
RNA id XM_043253023.1
length 3773
RNA type mRNA
GC content 0.43
exon number 3
gene id dlx4b
representative True

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 889710 ~ 897517 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

tgtttgttttgaacgGAGGATttttagaaagttttttttttctaagcaaTCACTGCCAGCAGCTACAAACTGATTTCAATAAACACGAAGAAAGATCGCGTAATCATTTCAACAAGACATGCCATAattcaaggatgcattaatatATACGTGCGTTAATTTTTTGAATAGACGTTTTGTGTTTGTGGTCGTTAAATTTCACGTtgaatgtcatttttacataattcatttatttatattattaatataatatttaacgaTCAAGCCGTACAGTGAGACGCCATGCTCCTGTCATTTTGTGACAAATGTACTCATTTTTCTAATCTTTCTAATGACTAATAATTGTGAAAAGGCCCAATGTCTTTTTAATTACAGATATTTCGATTAAAAAGAGCAATAACTAGCCCGCACCGCATGCAGGCGACCGGCTGTAAAAGTTGCACCGCgttgagagattttttttttttgcctgtaaaTGTGTCGCAGATCTCTTCGCGGGCGGTTAGCTCCGAATCGTTTACGCAAAGGTCGCGTTAAAATTCGAAGATCGTTATTACGCGACGTGATCGATATCAGAGCTCGGCATAATTCGATAGCAAATGCTCATCAACTTCATTTAGCTCTCCCCGGTGTCGAGTGACACACCAATCAGCGCGCGCTCTCGCGGAGCGCGAGTCAGTCAGAAGCACGCAGGACCGCGAGCCCGAGGTGACTCCGATATTGCGCGGTTTAAAATCGCGTTGGTCTGTGAGATTCGATGCGGTGCGGCTTTTTTTAGGAAATACCTATTCGATCCCTATCTCGCGGCCGTTTCTTTTATCCCTGATTATTTTGGGATGGATCCGGTTCGAGCTCTTTTCGGTGCGCGGTGAACGTTCAATGCAGCACTCGGACCATCATCGGGCTTTATGGACTTGACCGTTAATGATGTCTATGGGTTTCATGTCTGATACGCTGAATAGTCCAGATCCTTCCAAATCGGCGTTTTTAGAGTTCGGCCACGGGCTTGCGAGCAACCAGCAGCATTTATCCGGATTCGCGCACAACCTTTACCCGGTTCATGGATTGCACTCCGGCGGACACCTCCAGCACGACGCTCCCTATCCTTCCAGCGCGTCCCATTACAGCCGGCCGCTGGGATACGCCTACCCCGGGCCGGTGAGCGCTCCCGCTGCGGGCGCCTACGTGCCTTACCAGCCAAACAACCACAGCAGCGCTCTGGCGCACGCGAGGGCCGAGGAGACGAACCACGAAAAGCCAGCGGTCATTGAGAATGGTGAAATTCGCCTTAATGGCAAGGGGAAGAAGATCCGCAAACCGCGAACCATTTACTCCAGCGTTCAGCTGCAGGCGCTGCACCAGCGCTTCCAGCAGACCCAGTACCTCGCGCTGCCCGAGCGCGCGGACCTCGCCGCGAAACTGGGCCTGACGCAGACGCAGGTGAAAATATGGTTTCAAAACAAGCGCTCCAAGTATAAGAAGATCATGAAGCACGGCTCCAGTGGACCTGAAGGGGAGCTGCTTCACACCACCTCCTCGTCCTCTCCATGCTCTCCGGGTCTCTCTCAGCTCTGGGAGGTCTCTATGGCCAACAAAGTGCCACCCATGCATCCCAGCAGTTATATGAACAATTACGGGCACTGGTATCCCCCGCACCACCAGGATCCTGCGCCCAGACCTCAGATGATGTGATTAAAATCGGAAACGCAGAGCCAGAGAGACTCTAACCCgtgaaggttttttttcctttacggTCTTCATATGTGTTTTATTGCTTAGTGTGTTTGAAAGGACTGTGTTTTCCTCCCCCTGACTCCCCCCATATTACACTTCAGTAGCTTTTCGACCTTTTCAGATCTTTTACAATGTGCTTGAAATAAAGGATTTATGAAAGGACGAAAATGTTATGAATGATTTATAgaaattttgatatttatttttttttacgtaaatTGTAAGGTCCTGGCGCGTTCGCGTGGTGTGTATAGCCTATTTAAAACGATCttgttttacaataatattgttattaataaacgCGAGTGAAATAGATCTATAAAGGCCCCTAAATTAGCCTTCTGGAATACATTTTTGAGATTAAACGAAGCTGCCAAAATACGTTATTACGCCAATGTTATGAATtcatcattaataaattaatccaCAGATGTTCACTCAGCGTCCGACTTCTAGAcattttcgtttttgtttttttgggggggggttttTACGTTGTCAAAGTGTGGGAAAACTAGGTTGagatttatgaattatttatgatCAAGGCACACGGATGTAAGATGATCTGCTTTTCTATTCgactatattttttttagatacagGCTATAGGCAGgcctatatatatttatatatatataaaaaaagaaaaagtaaagcaCGCTATTTGTCGAGTTctgttcttattttaatttaaatatgaatgaaattgtgacttgttataaataaatctagATTTCTGATGTTACCTACTAAAAATAGCGTTACGTAAAACGCTGCATCCATAAGcgaaagtacacacacacacacacacacacatccttcaAATCAACAGGGTCCGacttaaataaatgtcattttgaaaatatttagaaatgttgccaATGTAATCGTTCGCGCGCGCAGCTGCTAGATTAACCAGCGATTGAATTATGAATAACCGACAACAATTACATGCTCAGTGATGCAGAAAGGTTCGATTTTTAAGTCAAATACCCGTAATATCTTATTGAGTCAGaatcatacaaatatataaatacgcgGCTAGTTATCGAATCTCAAGACGCTTGTAACAAATTAGTAAACATCTGCTTTTGTTCTCCTGCTTTCTTTCTGaagtaatgataaaataattcaaagcaCTGATTGAGTTGATGTCGTGATGCCACCATGATAAATCACCGCAGTATATAATCAAATGCAGGAGAGAAAACATAATTAAACGTGCATTTCGGCGCTTAAACTGTCTAAATACCGCGAACAAGATGTTTGTGTTGCATACGCATCCCAAATTACGCTGATGCTCATTTAATGCGATTCACCATGATTTATGGCGTGCTTATTCCCGCCGTGGTTATTTACCAGGAGATGTTcgtatgcatgcattttgaggccaaaaaaaaaaaaacaacaaaaaacgcGACGCGTCTTTTTGTTATTTAGGGTTCTCGCGTAGAAGTTCCATTTTTGGTTCCTCAAAGAGTGAAcggtttttaaaaatagctattttttaGGCTATGCGAGTCTACATGCGAGCTTTAAGCCTTTTTGCGAAGCGAAAACCCATGGTGTCACAAACGGTCTCAAAATAAAGGGTGCAGATGTTGCTCTGGTAACAAGATGCCACCTGGAGAATGCAGGGTCCACTTGACCTGACTTTGACCCAGCTCACTCAACAGGGTCTTGTCTAAACAGCCTTGTTCAAACAGGCATATTACAAAGCATCTCTGTCGTTTCAAACTCCTCGCATCCAACGCCATCCAGCACAGTGTGGGcctttttccttcattttaatCGTTCACATTAGATCGCCGAGTGGGTTTTATTATACAGCCTGTCATAAGATAAAATAATGCCTGCCACATGCCACTCTCATGCACGGaacaataatgacaaaattctCCCGAAACCTTTTCGCTGCATGAAACTTTTAATATCATGTGCAATAATGCACGTTTATGAGCCTCCACGACATTTGTGGGAGATTTACTGCGATGACTCCGCGGTCCCACgatccttttttttcttactcgTTTAGT

Function

GO:

id name namespace
GO:0021559 trigeminal nerve development biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0035270 endocrine system development biological_process
GO:0043010 camera-type eye development biological_process
GO:0043049 otic placode formation biological_process
GO:0048666 neuron development biological_process
GO:0005634 nucleus cellular_component
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function

KEGG:

id description
K18488 DLX2; homeobox protein DLX2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU125550 lncRNA downstream 100707 759925 ~ 789003 (-) True G84700
XR_006252207.1 lncRNA downstream 119812 766654 ~ 769898 (-) True LOC122355303
TU125504 lncRNA downstream 225964 660089 ~ 663746 (-) True G84666
TU125489 lncRNA downstream 277863 610067 ~ 611847 (-) True G84654
TU125427 lncRNA downstream 337267 543246 ~ 552443 (-) True ifnphi4
XR_006252166.1 lncRNA upstream 49510 947027 ~ 979785 (-) False LOC122355070
XR_006252165.1 lncRNA upstream 49510 947027 ~ 979785 (-) True LOC122355070
TU125630 lncRNA upstream 49597 947114 ~ 979785 (-) False LOC122355070
TU125692 lncRNA upstream 167416 1064933 ~ 1065345 (-) True G84793
XR_006252226.1 lncRNA upstream 251422 1148939 ~ 1172741 (-) True LOC122355531
XM_043253100.1 mRNA downstream 21833 837814 ~ 867877 (-) True itga3b
XM_043253101.1 mRNA downstream 21834 838470 ~ 867876 (-) False itga3b
XM_043253402.1 mRNA downstream 86908 798821 ~ 802802 (-) False abi3b
XM_043253399.1 mRNA downstream 86910 798821 ~ 802800 (-) True abi3b
XM_043253400.1 mRNA downstream 87090 798821 ~ 802620 (-) False abi3b
XM_043254251.1 mRNA upstream 85483 983000 ~ 990248 (-) True kat7b
XM_043254072.1 mRNA upstream 101670 999187 ~ 1005075 (-) True g6pc1a.1
XM_043254069.1 mRNA upstream 112470 1009987 ~ 1017230 (-) True aarsd1
XM_043253753.1 mRNA upstream 147899 1045416 ~ 1056434 (-) False a1cf
XM_043253750.1 mRNA upstream 147899 1045416 ~ 1056434 (-) False a1cf
XR_006252248.1 other downstream 529398 340273 ~ 360312 (-) False prr12a
XR_006252247.1 other downstream 529398 340273 ~ 360312 (-) False prr12a
XR_006252246.1 other downstream 529398 340273 ~ 360312 (-) False prr12a
TU125247 other downstream 568450 319330 ~ 321260 (-) True G84521
TU125173 other downstream 766943 115719 ~ 122767 (-) False G84485
TU125823 other upstream 973256 1870773 ~ 1947412 (-) False ank3b
unassigned_transcript_1807 other upstream 1596193 2493710 ~ 2493791 (-) True trnal-uag_3
TU126277 other upstream 1870391 2767908 ~ 2781353 (-) True G85232
TU126462 other upstream 2193268 3090785 ~ 3092413 (-) False LOC122355711
TU126480 other upstream 2361014 3258531 ~ 3299688 (-) False G85366

Expression Profile