RNA id: TU126188


Basic Information

Item Value
RNA id TU126188
length 698
lncRNA type inter_gene
GC content 0.35
exon number 2
gene id G85174
representative True

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 2485194 ~ 2486204 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCTTTTTGCCACTTATTTCCAAGTTGTCattgttatttgaaaaaaaaaaccatagcAGTAAAACACCTCTAGTCCGTTAGCGTTCGTTTATCATCAGATTTCGGAaaggtaatatttttttatttaatttcagagcATCCCGACACAACAAAGGTAAAAAGAAGCTTTAAGAGGACTACAAATCACAACctgtttcataaatgtttgttgttgttggtaagatactttattcatttacatctatacatttaaaaacggACAAGTGCCGAGTTATTTTCAGATTACTctactttatataatattacaaatatcaaGACAAACAGTTGTTGacaatagtattatttatttatttatttatttatgtggaCAGGAACAAATATATAGTGAACACATCCTCATTTCATTATTATGAAATGAAGAGTTAGACTCTGATAAAATGTTTGAGTATTGATGTGTGCCCATCAGATTTCATCAACAAAAGGCGTGTTGACCAAATGTCCACTGCAGGCCATCGTCTTTTTGCCAGACATGAATTTTTGTGCAACTTGACAACATCAGCTGAAGACACAGCACTGATTTTCTGGGTCACAGCCTCGGGAGAATGGTAGGTACCCTCCGCCAGCACTTGTGAACCAATAGCTTCCATTAAGCCCTCAGAACTCTCAATAGACATCAGGTATTCAGCCGTCACCTGATTC

Function

GO: NA

KEGG:

id description
ko04080 Neuroactive ligand-receptor interaction
ko04727 GABAergic synapse
ko04723 Retrograde endocannabinoid signaling
ko05032 Morphine addiction
ko05033 Nicotine addiction

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU126187 lncRNA downstream 1267 2482247 ~ 2483927 (-) True G85173
TU126127 lncRNA downstream 173723 2311243 ~ 2311471 (-) True G85119
TU126123 lncRNA downstream 176161 2306892 ~ 2309033 (-) True G85116
TU126124 lncRNA downstream 176161 2306892 ~ 2309033 (-) False G85116
TU125963 lncRNA downstream 304275 2173988 ~ 2180919 (-) False jmjd1cb
TU126193 lncRNA upstream 19974 2506178 ~ 2507961 (-) True G85177
TU126176 lncRNA upstream 87107 2573311 ~ 2576906 (-) True G85165
TU126235 lncRNA upstream 192518 2678722 ~ 2679291 (-) True G85214
TU126237 lncRNA upstream 193840 2680044 ~ 2680317 (-) True G85216
TU126283 lncRNA upstream 305716 2791920 ~ 2792523 (-) True G85235
XM_043254340.1 mRNA downstream 8798 2474996 ~ 2476396 (-) True snu13b
XM_043254337.1 mRNA downstream 11624 2470023 ~ 2473570 (-) True crym
XM_043254370.1 mRNA downstream 82509 2398531 ~ 2402685 (-) True LOC122355817
XM_043253542.1 mRNA downstream 92294 2381934 ~ 2392900 (-) True adam8b
XM_043253538.1 mRNA downstream 106018 2338676 ~ 2379176 (-) False exoc6
XM_043254444.1 mRNA upstream 94854 2581058 ~ 2585819 (-) True psmc5
XM_043254145.1 mRNA upstream 101540 2587744 ~ 2596891 (-) True smarcd2
XM_043254406.1 mRNA upstream 111692 2597896 ~ 2603692 (-) False atxn7l3b
XM_043254407.1 mRNA upstream 111692 2597896 ~ 2603690 (-) False atxn7l3b
XM_043254408.1 mRNA upstream 111692 2597896 ~ 2603690 (-) True atxn7l3b
TU125823 other downstream 537782 1870773 ~ 1947412 (-) False ank3b
TU125629 other downstream 1588164 891132 ~ 897030 (-) False dlx4b
XR_006252248.1 other downstream 2124882 340273 ~ 360312 (-) False prr12a
unassigned_transcript_1807 other upstream 7506 2493710 ~ 2493791 (-) True trnal-uag_3
TU126277 other upstream 281704 2767908 ~ 2781353 (-) True G85232
TU126462 other upstream 604581 3090785 ~ 3092413 (-) False LOC122355711
TU126480 other upstream 772327 3258531 ~ 3299688 (-) False G85366
TU126481 other upstream 812344 3298548 ~ 3299606 (-) False G85366

Expression Profile