RNA id: TU126193


Basic Information

Item Value
RNA id TU126193
length 1373
lncRNA type inter_gene
GC content 0.44
exon number 2
gene id G85177
representative True

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 2506178 ~ 2507961 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ggtttattgtttttttctttgtaatctTGTTCTCATTTGAAAATAGCCAGCAAAAATTATCACGCTCACTTCTGCACTCCTTGATTATGATGAATTATGAAAGCTTTTTGACAATCAAAACAGAACAGGTTAAAACTCACAGCAACATCTTCGACATCAGATCTAACGATACAAGcaaattaattttacagaagTAAAACCAATCATCAGTAACGTCATTTTTAACAGTCACAACAtgtttattaaagaaacatCCAGTTTTCCTTTtggaaacaagaaaaagaaattattgatAGGTAATGCACGCATTCCCATGAAGCAACCTGAACAGGCGGCAGACACTGTGCATCTATTCTTAATGAAAAATTAACCAGGATAGTATGTGTATTTAGCACCTCATTATATCCCTGATCTGGAATCAGCGTATGCCCTTGTTACATTCATTAGAAAACTGATCCAATATCAAAATTATTTCTCTTCAAGTCAAAGGGACCCAAGGAAAACATAAGGCATTGAAAACAGCATGTAAACAGGGGCTGGGTGCACAATAAGAACCGtgttcatgctttttttttgtacaccaGCACTTTCATTCTTCCATCATAGACCATGCTTCCTCTGCTTTCATGTAGTACTGATTGGCCAGTCTGCCCTTCATGGCCTCCATAGCGGCATCAGCAGCCTCGGTGAAAAGTGACCTGCTCTTTGGGGGTCTGCATCCAGGTCGTGTCCTCCCTCCTGGTACATCTCAGCCAATCGTGCCAAAAGAAGGTAGCGTGGTTCATCCTTTATCCCGTCGAACTCTCCCCCTTCGTCGTAGTCTGTCATCTTAAGGGCAGAGTCATACCAGTGCACGGCGTGTTTCCAGTCCATGACCCTGCATTTcaaaatccaaaacaaaaacctttagcTCCAAACGCATCTCGGCccaacaagacaaaaatgtaacattgagTTTCCCACCTATCAGAAGGGAGGCTCAAACCCGTGTCAAACGCTCGTGCAACTAGGATCATACTAGGCCGGTCTCCTGCCTCAGCGGCCTGCAGCAGAAAGCGGAAACCCTTCTTGCTGTTTTCTTCAGATGCCTGAGATGAAACAAGACATGACAGAGGAAGCACAACCAGGACCACTAAAACAATGTAATTAGGAACCACAACAAGGTAATTAGGAAAAAGCAAGCACCTCTAATTCGATCTCTGGTAGAATGTGATGTGGGAGCTGAAGGTAACATTGGCCAAGGGCAACTATAGCCTCAAGCTCCCCACACATGGCAGCCCTTTCCAAATGGTACATCGCAGAAATCTGGTCCCACGGTGCATCCTTCTCACAGAAGCGCCCGGCCTCGTGGTAGCGAACCATGGCAAGATGAA

Function

GO: NA

KEGG:

id description
ko00190 Oxidative phosphorylation
ko04723 Retrograde endocannabinoid signaling
ko04714 Thermogenesis
ko05010 Alzheimer disease
ko05012 Parkinson disease
ko05016 Huntington disease
ko04932 Non-alcoholic fatty liver disease

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU126188 lncRNA downstream 19974 2485194 ~ 2486204 (-) True G85174
TU126187 lncRNA downstream 22251 2482247 ~ 2483927 (-) True G85173
TU126127 lncRNA downstream 194707 2311243 ~ 2311471 (-) True G85119
TU126123 lncRNA downstream 197145 2306892 ~ 2309033 (-) True G85116
TU126124 lncRNA downstream 197145 2306892 ~ 2309033 (-) False G85116
TU126176 lncRNA upstream 65350 2573311 ~ 2576906 (-) True G85165
TU126235 lncRNA upstream 170761 2678722 ~ 2679291 (-) True G85214
TU126237 lncRNA upstream 172083 2680044 ~ 2680317 (-) True G85216
TU126283 lncRNA upstream 283959 2791920 ~ 2792523 (-) True G85235
TU126303 lncRNA upstream 361179 2869140 ~ 2869689 (-) True G85250
XM_043254340.1 mRNA downstream 29782 2474996 ~ 2476396 (-) True snu13b
XM_043254337.1 mRNA downstream 32608 2470023 ~ 2473570 (-) True crym
XM_043254370.1 mRNA downstream 103493 2398531 ~ 2402685 (-) True LOC122355817
XM_043253542.1 mRNA downstream 113278 2381934 ~ 2392900 (-) True adam8b
XM_043253538.1 mRNA downstream 127002 2338676 ~ 2379176 (-) False exoc6
XM_043254444.1 mRNA upstream 73097 2581058 ~ 2585819 (-) True psmc5
XM_043254145.1 mRNA upstream 79783 2587744 ~ 2596891 (-) True smarcd2
XM_043254406.1 mRNA upstream 89935 2597896 ~ 2603692 (-) False atxn7l3b
XM_043254407.1 mRNA upstream 89935 2597896 ~ 2603690 (-) False atxn7l3b
XM_043254408.1 mRNA upstream 89935 2597896 ~ 2603690 (-) True atxn7l3b
unassigned_transcript_1807 other downstream 12387 2493710 ~ 2493791 (-) True trnal-uag_3
TU125823 other downstream 558766 1870773 ~ 1947412 (-) False ank3b
TU125629 other downstream 1609148 891132 ~ 897030 (-) False dlx4b
XR_006252248.1 other downstream 2145866 340273 ~ 360312 (-) False prr12a
TU126277 other upstream 259947 2767908 ~ 2781353 (-) True G85232
TU126462 other upstream 582824 3090785 ~ 3092413 (-) False LOC122355711
TU126480 other upstream 750570 3258531 ~ 3299688 (-) False G85366
TU126481 other upstream 790587 3298548 ~ 3299606 (-) False G85366
TU126483 other upstream 790587 3298548 ~ 3299606 (-) True G85366

Expression Profile