RNA id: TU126730


Basic Information

Item Value
RNA id TU126730
length 817
lncRNA type inter_gene
GC content 0.44
exon number 2
gene id G85541
representative True

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 4268003 ~ 4269616 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ctgaaaaaaaattcaacattcAAAGCGATTGCAGTAAATCATGGGCTGTGATGTAACCTAGTTTGAGAAAACCATGGTACAATGATGGTCTCTGAGAATTCCACAGACTTTTAGCACACAGTAGGCGATATTTGAAGCGGATCAAAAAAGATCAGCAAAGTCgtcctaagacaagaacacattttggttgATGAACTTCAAATGTTGATTAGTGCATACCATGGTACTGCATGCTTGCACTGTCCTGGATGACTCAGCTGAACTCAACTAACGGCAATACCGGTAATATGGGACTACAATTTATTGGATCTCAAATTTGATTCGGTCAGGAGATTTAATCACTTCACCTGTGTGGATTTGTCTTCCCTGCCATGTCTGTCATCCACTTTGGGCCACTGGCCTTGTAAGTATGGCCGCACAACTGCATCCAAAGATACGGTGTGTTGAGTCGGAGTCTGCAAACGCCACTCTGATTTGGTTTTTTTCACCTGGAGCGATATTTGTGACGGCAGCTCCAGCTGGTTTGTGCAGCGTGAAGGGAACGGTAGCTTTGAGAGGCTGGAGACCTGATCCGCTCCTGGACTTCTTCATCTCTCCACAGTAGGCACTCACTCTGGCGGCATGAGCAGTTTTTGTGCTTCTTCAGTTGTCCATATCCAGCTATGTATCCATTCTAAATGCTTACCGTCCAGTTTCTTAACTAGTCCGATAACTATAAGATATACCCGTTTAATCGCGTTCGAGTATGAGGTTATAAACTTGAGAGAATTTGCTTCTCAACACCGAGTAACACTATTCAACTCTTCCTCTGTGTCGt

Function

GO:

id name namespace
GO:0051186 obsolete cofactor metabolic process biological_process
GO:0004418 hydroxymethylbilane synthase activity molecular_function

KEGG:

id description
ko00860 Porphyrin and chlorophyll metabolism

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU126718 lncRNA downstream 46237 4221514 ~ 4221766 (-) False kcnh6b
TU126717 lncRNA downstream 46510 4221290 ~ 4221493 (-) False kcnh6b
TU126694 lncRNA downstream 79666 4183582 ~ 4188337 (-) True G85515
TU126689 lncRNA downstream 91737 4175990 ~ 4176266 (-) True G85511
TU126648 lncRNA downstream 92780 4117805 ~ 4175223 (-) True G85487
TU126735 lncRNA upstream 5721 4275337 ~ 4277399 (-) False G85545
TU126737 lncRNA upstream 5721 4275337 ~ 4284935 (-) True G85545
TU126741 lncRNA upstream 28251 4297867 ~ 4305022 (-) False LOC122355775
TU126743 lncRNA upstream 41837 4311453 ~ 4311904 (-) True G85551
TU126745 lncRNA upstream 42963 4312579 ~ 4313048 (-) True G85553
XM_043253162.1 mRNA downstream 30774 4232549 ~ 4237229 (-) True LOC122355129
XM_043254332.1 mRNA downstream 37964 4217404 ~ 4230039 (-) True kcnh6b
XM_043254160.1 mRNA downstream 97081 4167639 ~ 4170922 (-) True dnajc9
XM_043254366.1 mRNA downstream 114128 4139060 ~ 4153875 (-) False p4ha1a
XM_043254364.1 mRNA downstream 114128 4139060 ~ 4153875 (-) False p4ha1a
XM_043254333.1 mRNA upstream 29432 4299048 ~ 4305215 (-) True LOC122355775
XM_043253007.1 mRNA upstream 142957 4412573 ~ 4416897 (-) True LOC122355055
XM_043253609.1 mRNA upstream 660197 4929813 ~ 5055115 (-) True LOC122355389
XM_043253608.1 mRNA upstream 665256 4934872 ~ 5042763 (-) False LOC122355389
XM_043253841.1 mRNA upstream 1010765 5280381 ~ 5330233 (-) False ccser2b
unassigned_transcript_1877 other downstream 187821 4080101 ~ 4080182 (-) True trnal-uag_48
unassigned_transcript_1876 other downstream 188808 4079113 ~ 4079195 (-) True trnal-aag_57
unassigned_transcript_1875 other downstream 188981 4078941 ~ 4079022 (-) True trnal-uag_47
unassigned_transcript_1874 other downstream 190142 4077778 ~ 4077861 (-) True trnal-uag_46
unassigned_transcript_1873 other downstream 191106 4076819 ~ 4076897 (-) True trnal-aag_56
unassigned_transcript_1878 other upstream 75769 4345385 ~ 4345467 (-) True trnal-uag_49
unassigned_transcript_1879 other upstream 78082 4347698 ~ 4347779 (-) True trnal-uag_50
unassigned_transcript_1880 other upstream 78246 4347862 ~ 4347942 (-) True trnal-aag_58
unassigned_transcript_1881 other upstream 79249 4348865 ~ 4348946 (-) True trnal-uag_51
unassigned_transcript_1882 other upstream 80404 4350020 ~ 4350101 (-) True trnal-uag_52

Expression Profile