RNA id: TU126741


Basic Information

Item Value
RNA id TU126741
length 406
lncRNA type sense_over
GC content 0.52
exon number 4
gene id LOC122355775
representative False

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 4297867 ~ 4305215 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CGAAGACTAGACTTTCCCAAAGTCTTTCCTCTCAGTCTCCGACTAGAACATGGACAGGCTTCGGTGGAAACATGCACATCCAGCACCACTTCATTTATGGCACAGAAGATGTCACATTTGTTCCTGAAGTGACGGCTCGTTAGTTCTGCCCTTAAAGGAAATCAACATGGGAAAAGTGCAATCGAAAGCCGGAGATGTTTTCATGGAGGCTGAGTGTATTGGTGAagtggacagaaacaaacagGAGGGAGACACCTTTGAGGGCACAGCAGCGTCCAGCGCAAGACCTGGCGGCCCTAGAGAAACCTCCAGAGGCATCTGCGACAAAAACGGGTGAGAGCGAGGCCTTCAACATCACTGCCGGAAACCAGAAGCGCAGGAGGAGACGCCGCCAGGCTGTCCAATG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU126737 lncRNA downstream 12932 4275337 ~ 4284935 (-) True G85545
TU126735 lncRNA downstream 20468 4275337 ~ 4277399 (-) False G85545
TU126730 lncRNA downstream 28251 4268003 ~ 4269616 (-) True G85541
TU126718 lncRNA downstream 76101 4221514 ~ 4221766 (-) False kcnh6b
TU126717 lncRNA downstream 76374 4221290 ~ 4221493 (-) False kcnh6b
TU126743 lncRNA upstream 6431 4311453 ~ 4311904 (-) True G85551
TU126745 lncRNA upstream 7557 4312579 ~ 4313048 (-) True G85553
TU126764 lncRNA upstream 106318 4411340 ~ 4412200 (-) True G85569
TU126762 lncRNA upstream 107602 4412624 ~ 4413362 (-) False LOC122355055
TU126767 lncRNA upstream 147733 4452755 ~ 4453276 (-) True G85572
XM_043253162.1 mRNA downstream 60638 4232549 ~ 4237229 (-) True LOC122355129
XM_043254332.1 mRNA downstream 67828 4217404 ~ 4230039 (-) True kcnh6b
XM_043254160.1 mRNA downstream 126945 4167639 ~ 4170922 (-) True dnajc9
XM_043254364.1 mRNA downstream 143992 4139060 ~ 4153875 (-) False p4ha1a
XM_043253007.1 mRNA upstream 107551 4412573 ~ 4416897 (-) True LOC122355055
XM_043253609.1 mRNA upstream 624791 4929813 ~ 5055115 (-) True LOC122355389
XM_043253608.1 mRNA upstream 629850 4934872 ~ 5042763 (-) False LOC122355389
XM_043253841.1 mRNA upstream 975359 5280381 ~ 5330233 (-) False ccser2b
XM_043253843.1 mRNA upstream 975359 5280381 ~ 5330233 (-) False ccser2b
unassigned_transcript_1877 other downstream 217685 4080101 ~ 4080182 (-) True trnal-uag_48
unassigned_transcript_1876 other downstream 218672 4079113 ~ 4079195 (-) True trnal-aag_57
unassigned_transcript_1875 other downstream 218845 4078941 ~ 4079022 (-) True trnal-uag_47
unassigned_transcript_1874 other downstream 220006 4077778 ~ 4077861 (-) True trnal-uag_46
unassigned_transcript_1873 other downstream 220970 4076819 ~ 4076897 (-) True trnal-aag_56
unassigned_transcript_1878 other upstream 40363 4345385 ~ 4345467 (-) True trnal-uag_49
unassigned_transcript_1879 other upstream 42676 4347698 ~ 4347779 (-) True trnal-uag_50
unassigned_transcript_1880 other upstream 42840 4347862 ~ 4347942 (-) True trnal-aag_58
unassigned_transcript_1881 other upstream 43843 4348865 ~ 4348946 (-) True trnal-uag_51
unassigned_transcript_1882 other upstream 44998 4350020 ~ 4350101 (-) True trnal-uag_52

Expression Profile