RNA id: XM_043254333.1


Basic Information

Item Value
RNA id XM_043254333.1
length 1779
RNA type mRNA
GC content 0.50
exon number 5
gene id LOC122355775
representative True

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 4297867 ~ 4305215 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

tggagaaatgaaagctgaacatgTAGAACATAAGAATATGGTCCAAAGATTGAACTCTCATGCTCATTTTACCAGGCTGTCCAATGAATAAAGTGCGCTAAAACTGAAGGAGGTGGACTTCATCAAAGGGAGGGTGAATCCTACGAGTTGAGCTTCCTCCACAGCGAGTGAGAGAGCGTGAAGAAAATCTTTACGAAGACTAGACTTTCCCAAAGTCTTTCCTCTCAGTCTCCGACTAGAACATGGACAGGCTTCGGTGGAAACATGCACATCCAGCACCACTTCATTTATGGCACAGAAGATGTCACATTTGTTCCTGAAGTGACGGCTCGTTAGTTCTGCCCTTAAAGGAAATCAACATGGGAAAAGTGCAATCGAAAGCCGGAGATGTTTTCATGGAGGCTGAGTGTATTGGTGAagtggacagaaacaaacagGAGGGAGACACCTTTGAGGGCACAGCAGCGTCCAGCGCAAGACCTGGCGGCCCTAGAGAAACCTCCAGAGGCATCTGCGACAAAAACGGGTGAGAGCGAGGCCTTCAACATCACTGCCGGAAACCAGAAGCGCAGGAGGAGACGCCGCCAGtatggagagaaagagaaggaaaggcaggtgaagagaaaggtgaagaaggagagagggatgaatgcagtaggaaaaaataaagaCGAGGCTGacgaagaaagagagacacttaACCCTGAAAAGAGAAAGGATAGAGGACATGcgctgcagaaaaaaagagagatggagagtctAGAAATTGTGATGGAGGGAGGAAGCGAGCATAGAGAggttggagaaaaaaagaaaaggaagaaaaaactgAAGGAGCAAAAGACTACTGAGCCAACACCACGTCTTGTGGAGGCGAAACCTCTGCTCATTCTAGTCACTCCTCCAGTGAGAGCTTCCTTACTGAAGCCAATAGAAGGAAAACTTCCAGTGCTTTCAGGAGTCTGTGAAGACCTTCTTCCACCCGCTGCTCCCTTCAAGCCCCTGCCTCCAGTGACTAAACTGCCCGCGTGTCCTCAAAATCCAGTTCCTGCACCAGAGGAAGTGTCTCTGCTATGGCCTCCTCTTCAGGTGGATCCTCCCGAGCCGCCGGCAGTTCCTCCACATCCCACTCCAGCACCTGAAGAAGTGTTTTCCCTCCGACGCTCCCACCTGAGTCCTTCCAAACAACTGGTGGTGCCTCCGAGCCCCGCTCCTAAACATGAAGAAGTTGTTGATCTGCAACATTCTTCATCTCAGGTTTATCCTTCCAGTCCCGTGGGACCTCAGCCGCCCACTTCTTCTCAGTTTGAGCCGCCTCCGCAACTCACGCTCATTGACATAGAGGATGACATAGAGTCAGAGTTCGCGGACTACACAGGGAACTATCAGGCCTGGAACTTACCCAAGTCTGAAAGCCCCCGATCGATGGAGGCTGAAATCAGACCGAGGAAGACGATTGCTTGGTTGGAGAGTGACAGCGAGTTGCTAGAGGAAGTGGTAGAGGTCCAGGGATGGCATCTGGATGGCGCCGCACAGAACAAAAAAGAGTTGGAGACCCAGCACAATGCGAAGGTCCAGGAAGTGCCACAGAGCCGAAGAAAAGTGTCCCGCTTTCTGTTCGCCTGGGCAGAAAAGAAGACCAAGGAAAGGGAGgagaagaaaatattgaaagagaaggagcaaagagagaaagagttgctGCTTGAACGCTACAGAAATGATCCAAAACTGAAGCACTTGTTGTTTAATAAGCACAACCGCCACTACTGCTCCGGATGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU126737 lncRNA downstream 14113 4275337 ~ 4284935 (-) True G85545
TU126735 lncRNA downstream 21649 4275337 ~ 4277399 (-) False G85545
TU126730 lncRNA downstream 29432 4268003 ~ 4269616 (-) True G85541
TU126718 lncRNA downstream 77282 4221514 ~ 4221766 (-) False kcnh6b
TU126717 lncRNA downstream 77555 4221290 ~ 4221493 (-) False kcnh6b
TU126743 lncRNA upstream 6238 4311453 ~ 4311904 (-) True G85551
TU126745 lncRNA upstream 7364 4312579 ~ 4313048 (-) True G85553
TU126764 lncRNA upstream 106125 4411340 ~ 4412200 (-) True G85569
TU126762 lncRNA upstream 107409 4412624 ~ 4413362 (-) False LOC122355055
TU126767 lncRNA upstream 147540 4452755 ~ 4453276 (-) True G85572
XM_043253162.1 mRNA downstream 61819 4232549 ~ 4237229 (-) True LOC122355129
XM_043254332.1 mRNA downstream 69009 4217404 ~ 4230039 (-) True kcnh6b
XM_043254160.1 mRNA downstream 128126 4167639 ~ 4170922 (-) True dnajc9
XM_043254366.1 mRNA downstream 145173 4139060 ~ 4153875 (-) False p4ha1a
XM_043253007.1 mRNA upstream 107358 4412573 ~ 4416897 (-) True LOC122355055
XM_043253609.1 mRNA upstream 624598 4929813 ~ 5055115 (-) True LOC122355389
XM_043253608.1 mRNA upstream 629657 4934872 ~ 5042763 (-) False LOC122355389
XM_043253841.1 mRNA upstream 975166 5280381 ~ 5330233 (-) False ccser2b
XM_043253843.1 mRNA upstream 975166 5280381 ~ 5330233 (-) False ccser2b
unassigned_transcript_1877 other downstream 218866 4080101 ~ 4080182 (-) True trnal-uag_48
unassigned_transcript_1876 other downstream 219853 4079113 ~ 4079195 (-) True trnal-aag_57
unassigned_transcript_1875 other downstream 220026 4078941 ~ 4079022 (-) True trnal-uag_47
unassigned_transcript_1874 other downstream 221187 4077778 ~ 4077861 (-) True trnal-uag_46
unassigned_transcript_1873 other downstream 222151 4076819 ~ 4076897 (-) True trnal-aag_56
unassigned_transcript_1878 other upstream 40170 4345385 ~ 4345467 (-) True trnal-uag_49
unassigned_transcript_1879 other upstream 42483 4347698 ~ 4347779 (-) True trnal-uag_50
unassigned_transcript_1880 other upstream 42647 4347862 ~ 4347942 (-) True trnal-aag_58
unassigned_transcript_1881 other upstream 43650 4348865 ~ 4348946 (-) True trnal-uag_51
unassigned_transcript_1882 other upstream 44805 4350020 ~ 4350101 (-) True trnal-uag_52

Expression Profile