RNA id: TU126906


Basic Information

Item Value
RNA id TU126906
length 253
lncRNA type inter_gene
GC content 0.49
exon number 2
gene id G85687
representative True

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 5495107 ~ 5496234 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGTGCGCTCAGGGTGCCAGTGGTTTGGTGGTACTCCATCACACAGTTGTTGTTCAGAATCTCTCCGCTACTGTCACTTTTGCGGGTGTTTTCATTCTTTAGCAAGGCCTTGGCCTGCTGTTCGCTGATGATGGTGGCTTTAACCTGTGGAGGATTCATGTGGACATTGAGTTTCCCTCCGACCAGCAAGCGAACCGTTGCCGAAAATTTGGTTTGAGTCTTCAGCACTTGAGGAGGCTGTTTCTCAATTATAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU126904 lncRNA upstream 2173 5491714 ~ 5492934 (+) True G85685
TU126902 lncRNA upstream 9358 5483574 ~ 5485749 (+) True G85683
TU126891 lncRNA upstream 48388 5445407 ~ 5446719 (+) False drosha
TU126873 lncRNA upstream 92395 5397563 ~ 5402712 (+) True G85661
XR_006252214.1 lncRNA upstream 337375 5154654 ~ 5157732 (+) True LOC122355395
TU126935 lncRNA downstream 105240 5601474 ~ 5602181 (+) True G85713
TU126989 lncRNA downstream 316015 5812249 ~ 5816315 (+) False LOC122355829
TU127011 lncRNA downstream 325197 5821431 ~ 5821687 (+) True G85774
TU127179 lncRNA downstream 461660 5957894 ~ 5958234 (+) True G85905
TU127264 lncRNA downstream 601894 6098128 ~ 6098334 (+) True G85967
XM_043254437.1 mRNA upstream 18443 5452829 ~ 5476664 (+) True kcnh4b
XM_043254292.1 mRNA upstream 48420 5426581 ~ 5446687 (+) True drosha
XM_043254307.1 mRNA upstream 71690 5420706 ~ 5423417 (+) True psme2
XM_043254199.1 mRNA upstream 82669 5405555 ~ 5412438 (+) True irf9
XM_043253692.1 mRNA upstream 98595 5382602 ~ 5396512 (+) False atp2a1l
XM_043254357.1 mRNA downstream 14464 5510698 ~ 5532907 (+) True oplah
XM_043253874.1 mRNA downstream 47521 5543755 ~ 5564754 (+) True ppp1r16a
XM_043253921.1 mRNA downstream 117845 5614079 ~ 5621340 (+) True fkbp10b
XM_043254048.1 mRNA downstream 172666 5668900 ~ 5684328 (+) False si:ch211-217a12.1
XM_043254046.1 mRNA downstream 172674 5668908 ~ 5684328 (+) True si:ch211-217a12.1
TU126784 other upstream 405469 5088925 ~ 5089638 (+) True G85587
TU126761 other upstream 1041832 4452855 ~ 4453275 (+) True G85567
TU126759 other upstream 1075894 4418247 ~ 4419213 (+) True LOC122355720
TU126747 other upstream 1091427 4401131 ~ 4403680 (+) False LOC122355090
TU126733 other upstream 1217722 4275344 ~ 4277385 (+) True ndufa4b
XR_006252205.1 other downstream 390718 5886952 ~ 5953312 (+) False becn1
XR_006252206.1 other downstream 390718 5886952 ~ 5943580 (+) False becn1
TU127259 other downstream 599714 6095948 ~ 6096732 (+) True G85962
TU127298 other downstream 718685 6214919 ~ 6216567 (+) True G85986
TU127334 other downstream 944587 6440821 ~ 6441526 (+) True G86019

Expression Profile