RNA id: TU126935


Basic Information

Item Value
RNA id TU126935
length 708
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G85713
representative True

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 5601474 ~ 5602181 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AGTGGAAGTAAACTGCTTTTAATATACAATTgtacaaatatcaaaacaaaagttcatgatccagtaaaataaatgtaatacatttattaataaaatctcTACAGGTATTCACAATTTTgtcttaaaacatgtttaattgtCCAAAGGCCTTCATAAAGTTAATTTCCAGTGttaatataaaatcttttaagCTAAAAATTCTAATCATGGACATCAGTGGTAAAAGACTTGTATAGTCCATTTCTTTTAGATCTTGTTATTGGAATGCACTTCTATTATTGTCACTTTAAGATGCCTTAAAACATTACCTGacatcaaaaaattaaaacactgtcCAGTGTACCAGTCATGCCACCACATCCATTGATGCACATTTAAAGGAAATCagaaaagtcttttaaaaatgacctcAAATTACCCCAAAGACCATCAAAGGGCATTTTTGCCTTCACAGTGTTCCCTATCCTGCATGTTCTCCAAAAACTGCCATGGCATTGTTCTACCATCAACACTGCCTCTAAACTGGAGAGAGGCCAGACACAGCACTTAGACTAATTGGATAATGCCCCTCCAGCAAAGCCTCATTAAATTCTCAATACCAGCACGCGTTCCCGGATATTTCTGCTGAAAAGTCATGGTCAACACTCAGGGCAAGAGAGAGCCATAAGAGAAGTCATAGAggtcactcaaaaaaaaaaaaaaaaaaaa

Function

GO:

id name namespace
GO:0043226 organelle cellular_component
GO:0043229 intracellular organelle cellular_component

KEGG:

id description
ko03013 Nucleocytoplasmic transport
ko03030 DNA replication
ko03420 Nucleotide excision repair
ko03430 Mismatch repair
ko04110 Cell cycle

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU126906 lncRNA upstream 105240 5495107 ~ 5496234 (+) True G85687
TU126904 lncRNA upstream 108540 5491714 ~ 5492934 (+) True G85685
TU126902 lncRNA upstream 115725 5483574 ~ 5485749 (+) True G85683
TU126891 lncRNA upstream 154755 5445407 ~ 5446719 (+) False drosha
TU126873 lncRNA upstream 198762 5397563 ~ 5402712 (+) True G85661
TU126989 lncRNA downstream 210068 5812249 ~ 5816315 (+) False LOC122355829
TU127011 lncRNA downstream 219250 5821431 ~ 5821687 (+) True G85774
TU127179 lncRNA downstream 355713 5957894 ~ 5958234 (+) True G85905
TU127264 lncRNA downstream 495947 6098128 ~ 6098334 (+) True G85967
TU127269 lncRNA downstream 498981 6101162 ~ 6118513 (+) False G85971
XM_043253874.1 mRNA upstream 36720 5543755 ~ 5564754 (+) True ppp1r16a
XM_043254357.1 mRNA upstream 68567 5510698 ~ 5532907 (+) True oplah
XM_043254437.1 mRNA upstream 124810 5452829 ~ 5476664 (+) True kcnh4b
XM_043254292.1 mRNA upstream 154787 5426581 ~ 5446687 (+) True drosha
XM_043254307.1 mRNA upstream 178057 5420706 ~ 5423417 (+) True psme2
XM_043253921.1 mRNA downstream 11898 5614079 ~ 5621340 (+) True fkbp10b
XM_043254048.1 mRNA downstream 66719 5668900 ~ 5684328 (+) False si:ch211-217a12.1
XM_043254046.1 mRNA downstream 66727 5668908 ~ 5684328 (+) True si:ch211-217a12.1
XM_043254047.1 mRNA downstream 69170 5671351 ~ 5684328 (+) False si:ch211-217a12.1
XM_043254043.1 mRNA downstream 89177 5691358 ~ 5699906 (+) False kbtbd2
TU126784 other upstream 511836 5088925 ~ 5089638 (+) True G85587
TU126761 other upstream 1148199 4452855 ~ 4453275 (+) True G85567
TU126759 other upstream 1182261 4418247 ~ 4419213 (+) True LOC122355720
TU126747 other upstream 1197794 4401131 ~ 4403680 (+) False LOC122355090
TU126733 other upstream 1324089 4275344 ~ 4277385 (+) True ndufa4b
XR_006252205.1 other downstream 284771 5886952 ~ 5953312 (+) False becn1
XR_006252206.1 other downstream 284771 5886952 ~ 5943580 (+) False becn1
TU127259 other downstream 493767 6095948 ~ 6096732 (+) True G85962
TU127298 other downstream 612738 6214919 ~ 6216567 (+) True G85986
TU127334 other downstream 838640 6440821 ~ 6441526 (+) True G86019

Expression Profile