RNA id: XM_043254389.1


Basic Information

Item Value
RNA id XM_043254389.1
length 5117
RNA type mRNA
GC content 0.37
exon number 12
gene id LOC122355829
representative False

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 5766397 ~ 5816315 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGCACAGTCCGAGGACAACTCCCAGCCTGGAAACTTTGAGGCGAGCAGGAAAAAGACATTACCAcacatatttctctttttcttccatCGGGAAGTCATCctagtttgattattttttattaattttactttatattttttttaactgatggACGATTTAGGAGTGTGTGATACATCCAACTACCCTCTCAGTCCCCGTATTGTTATGTTTGATGCCCTTCTTGCTGATCTGGAAAATTCAGCCTTTCCCCTGGGTCGCTGTCCTGTTCTTCTTACCTCTGACCCTCCAGTAAATTCTGATCCCCCATCCAGTCCTCAGGATCCTGCAGAGAACCGACCACTCCCTCCTGCATACACCCCGCAACAAacTGTTTCTGCTGCAATGAAGTCTAATGGCTCTCAGATCTCTAACCAAGACAAACTTTACAGTACTGTATGTAAACCACGCTTCCCACGTATGGCAGATGTTCCTCCTGCTTTCTCCTCATCCTCAGTTTTGGGAGGAGGGCTGAGTGAGCTTGATCACTTACTACAGGAGCTTAATGCCACACAGTTCAACATCACAGATGAGATTTTGGCTCAATTTCCCAGTACCAAAAAAGATGAGAAGTCTTCAAAGTCTGGTCCATCCTCTACTGGctCAGCAAAACCTTCAGCTACATCTGCGACTTTAGAGCTGGACAAACTAATGGCATCTCTATCAGACTTCAGAGTCCAAAGCTCAcCAGCAGCACCTGTGAGTCCTGTAGCACCTTCACCACAACAAGCTGCTTCCCCACCCCCTGCATCCTCTGGTGGCTCACTGGACAGCATGTTGGGTCTTCTTCAATCAGATCTAAGCAGGCAGGGAGTGCCTACATCTTCTAAGGGAAACTGCTCTGCCTGTCAGAAACCAGTTGTAGGACAGGTTGTAACAGCTCTGGGACGGGTTTGGCATCCAGAGCACTTTGTTTGCtctgagtgtgagtgtgagcttGGCAATTGTAATTTCTTTGAGAAAGATGGCCGACCATACTGCGAGCCTGACTACTTCACCCTGTACTCGCCTCACTGCGCACAATGCAACAAGCCCATACTCAATAAAATGGTGACTGCGCTGGATAAAAACTGGCATCCAGAATGCTTTAGCTGCGTGAAATGCAGCTCAACATTTGGAGATGAAGGTTTTCATGACCGTGATGGGAAGCAGTACTGCCAAAAGTGTTTTCTGGCTCTCTTTGCCTCTCGTTGTCAAGGTTGTTCCCAGCCCATCATGGAGAATTACATCTCAGCTCTAAGTGCTCTGTGGCATCCACAATGCTTTGTTTGTAGAGAATGCTATAGCCCATTTGTGAACGGGAGTTTCTTTGAACATGAGGGGCAACCTTTGTGTGAAGCTCACTACCATCAGTCCAGGGGAAGTGTGTGTCAGGCATGCCAGCAGCCAATCCTGGGGCGCTGTGTTACCGCGATGGGTGCCAAGTTTCATCCACAACATCTGGTGTGCCACTTCTGCCTGAAACCCCTTAGTAAAGGCTGCTTCAAAGAGCAGGACAACAAACCATATTGCCACCCCTGCTTCATCAAACTCTTTGGTTGAGGAGAGTGAGGAAAGATGATCAAGCAGATTATTCAACTGCCATACAGCATgtcatacaaaacaaaacaaaacaaatatacaaatatacattgtAACGTATTTTATGTGAACACACTCCTACTGTAAATAACAGATATAAATATTCCTATCTCCTAATTTTAAAGGTGCTCTATGAAGggcttttccaaaaaaaaaccccccaaaaaaacaaatgaagtatAGTATAGTACAGTATAGTACAAATATATACTACAAATTTCTTTAAACTATTACTTATGATCTACTATTGTCTGGTAGTGTTTGTGCATTTCTATGCTACAATTTTTTACAAGATGCTGCACGTGTTCTTGAAGCTGATACCATGTCAGAGGCATTGAAGAGCATTCTGGTCAAGTTTGAATACTATAATTGAACAAGAACAGAAAATCCTGCATAGTGCACCTTTAATGCTTTACCACACAATGTTCTACAGGGATTCTGCAATTTGTTGCCATTTAGAAGATTTAGAAGATGTGAGGGCATTGTCAcagaaaacattgtttaaaaaagtatttaactgaatatgtaaacaatttattaaattagcAGAGATCAGCAGCAAACAGAATTCAGCACAAGTGCAGGTGTAATTTTACACTGGTAGCGCAGACACAGCATTGAGTATAAACAGTCAAGGACCAGGTGGGAAATGAGCAAAATGAGTTGAAAGTAGTCAAGACTCAGCAGGGTAAAGACACACacaggagggagagagaaagaggaagcaaACCTGTGAACTGTGACAGTCAGACTTTGATGTTGCGTTTATCCTAAACTCAACAGCGATCAGGTTTGGCCCATGGTTAAGTCTACATCAGACCGAGAAAAgcaattttatattaacattgttatatataaaattgtgcaCAAATGCATTGTCATGCTGCAGAAAATGGGCCTTGCCAAATTCTCTAGAATGTTACTGAATGGCATAGCTttaaaatcatttgtatttgcatacttttaagtgctttttaaatctgtattggTGTCTGATAGAGGAGACATCCAAAATGTACAAGGGTGGGGGCACACTAGGACAGGTTTGAAAATCATTGATGAATAACAGTGATTGATAAACAAATACAGATTTTAGAAGGAGATTCTGTGCCCTATCAATCATATTggattttacacacacacacacacacacacacacacacacatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatattgatcagCTGATGACTAATTTATGTGGgtttaaagagagagaaatcaaaaATGTGCAGTACTGGGGAGAGTCTAGGAATAGTTTGAAAGCCTTGGACTACAAAAATAATCCATTATCCAATTATCCATATTATAAAATCAAGTTCAGCAATACTTTTAGTTATAAAACTTATAATATAGGTAATAAtgctgtataatattttatgaatataaatatttggtgTCATGatctgtttgaaaaaaaaaacacttgtaaaagtagttataatgcattaattaagcCTTGTAATGCACCTTATGCATTGTACAATCTCTTACAgttaatatagttaatatattacaaCACTACATCAATTCACTCTGCTCTATACAATTTActctatacattttaaatttggttatAATTACCTACAACAAGATATATTGTATTACATtgcacattatgaataattataatgtgtTATGCCCTTTAATAACCCTTTATAATGTATTCTGGGAAAAGTGTTACTCTTATTGTTTAAAAGACCACTTGTTCATCAATAATACCAATGTATTTTTGGTATTCTTCTTTTTACTCTGGTGCATTACATTATGCACTATACTGTATGTTGttagaaatgtttgaaattattGTGGGCAAACATTAAATATAGTCTTATGCTTTTTAAGATGAGACTCCAAGATAAGGGAAACGCAGGGTAATGCTCTGGTACAATAAAAggaattttcaaatattataggaaaaaaacaatctgaaatataaaaagtgcatCCAAAATAGACTTAGAGGCAGTCTAATCTCCACTTTTGAACAGAGTGGAATAAGGTGGAAAATGACATTTGATTAAAGTGGAAAATTACATACTCAAATACAAATTTCCATTACTTGCCAAATCACTGGCTTTTTAAAGCCTAATGAGTTTCACGTGTTGCAGCTGTATCAATTAACCAGTGTCAATGGGCCATGATGGACAAAACCAAGAACTACCCTacatattgtaatgttttaggTCACAATAAGGAAATACTATAATCACAGTTTGTTTCATAGCcaatttatgttcattttaaagtaagTTTAACAGAAATCACAGTGTCCATTTCAGTTTGGAGATTTTTTCTACTTCCTTAGTGTACCTGAAATTTAGTTCTTTGTTTCTTTGGCTGCACTGCTTATGTTGTGCAAGCTGAATAATTAATCCATATGATGGTACCTCATAATTGTCTTGATTTAGGCCAGGGGTGTCTTAAGTCCTTGAGGGCCATAGCcctagatgcaaccctaattaaacagaCCTGATCCAGCCAATCAAGTCATTAAGGCTTATTTGAAAATACATGGGCTGTGTTTGAAATGGCGTACTTGCTTACTGCCCAGTATACAGTGTATGCTGCCTGGTAATTTTTAAGGAATATTGTGTGAAACAGTATACAATAAGTAACAAATGTTTTAGAGTAGTATGCTTAATTATCACATgacaaatgcaaacttttattcagcagagCTGTCGAGTCTGTTACCTTAAAAACAAATGTCTGTTACCTtacaaacaaatgtttacaaagGCTTGTTAATAAGGCTCATAGaagtaaataatacataatctTGTCCAATTAAActcataatttcataattaatcaAATTGACATATTTGACAGAACTGAATCTGCTGAAACTGAGCTGTCTTTAACTGAACAATTACATTAGGGACAACTTGTAGGCTACTTGGTGAAATCATGCTCACCTAATTAATACAGTGTTTAATAAAACAGGCGTGCTTTTATGTAGGTTTTTGTCACAATGCCTTTTTGtgcatgtggggtttttttcgtGCTGTTTATCACAGCCAGGCATTGGTGGGTGGAGCTAATGTAAATAGGTTCTGCCCtacaaatagttttaaatttgtCCACATAATACACTCTGTTCCTTTTTTAGCAGAATTGAAGGTTGTTTGCATAATTGGAAGATTGTTttaatttctatattatattactgcAATATtaggattattattttttatatttttgatacaATTAATACTGTATAAAGTGTGATGACACCTGACTTGATCAGAAACGTGCTGTATATTGAAGTAAAATGTATGTACTACCAATGATACTGTTTTTAGATACACAGTACAAGCATCTCCATAAATTAGAACActgtggaaaagttcatttatttcagtaattcaatgcaaattgtgaaacttgtttattaattaaattcagtgCCCActgactgaagta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU126935 lncRNA upstream 164216 5601474 ~ 5602181 (+) True G85713
TU126906 lncRNA upstream 270163 5495107 ~ 5496234 (+) True G85687
TU126904 lncRNA upstream 273463 5491714 ~ 5492934 (+) True G85685
TU126902 lncRNA upstream 280648 5483574 ~ 5485749 (+) True G85683
TU126891 lncRNA upstream 319678 5445407 ~ 5446719 (+) False drosha
TU127011 lncRNA downstream 6973 5821431 ~ 5821687 (+) True G85774
TU127179 lncRNA downstream 143436 5957894 ~ 5958234 (+) True G85905
TU127264 lncRNA downstream 283670 6098128 ~ 6098334 (+) True G85967
TU127269 lncRNA downstream 286704 6101162 ~ 6118513 (+) False G85971
TU127270 lncRNA downstream 286704 6101162 ~ 6118513 (+) True G85971
XM_043254394.1 mRNA upstream 554 5762494 ~ 5765843 (+) True LOC122355830
XM_043254043.1 mRNA upstream 66491 5691358 ~ 5699906 (+) False kbtbd2
XM_043254044.1 mRNA upstream 66491 5691993 ~ 5699906 (+) True kbtbd2
XM_043254046.1 mRNA upstream 82069 5668908 ~ 5684328 (+) True si:ch211-217a12.1
XM_043253648.1 mRNA downstream 25745 5840203 ~ 5863290 (+) True med1
XM_043253407.1 mRNA downstream 72494 5886952 ~ 5953486 (+) True becn1
XM_043253408.1 mRNA downstream 72494 5886952 ~ 5953486 (+) False becn1
XM_043253410.1 mRNA downstream 85380 5899838 ~ 5953486 (+) False becn1
XM_043253015.1 mRNA downstream 510035 6324493 ~ 6391831 (+) True LOC122355059
TU126784 other upstream 676759 5088925 ~ 5089638 (+) True G85587
TU126761 other upstream 1313122 4452855 ~ 4453275 (+) True G85567
TU126759 other upstream 1347184 4418247 ~ 4419213 (+) True LOC122355720
TU126747 other upstream 1362717 4401131 ~ 4403680 (+) False LOC122355090
TU126733 other upstream 1489012 4275344 ~ 4277385 (+) True ndufa4b
XR_006252205.1 other downstream 72494 5886952 ~ 5953312 (+) False becn1
XR_006252206.1 other downstream 72494 5886952 ~ 5943580 (+) False becn1
TU127259 other downstream 281490 6095948 ~ 6096732 (+) True G85962
TU127298 other downstream 400461 6214919 ~ 6216567 (+) True G85986
TU127334 other downstream 626363 6440821 ~ 6441526 (+) True G86019

Expression Profile