RNA id: TU127021


Basic Information

Item Value
RNA id TU127021
length 3373
RNA type TUCP
GC content 0.40
exon number 11
gene id G85779
representative False

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 5322478 ~ 5396912 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ACCTACTGGTagttttaatgacatttatttatccatGACAGACCTAAAACAgccaaaaacagcaaaatgttGTTTCTTTATCCATACCAAAATCCTTAATTTCAGGCccagtgtaaaaatgtaaactaaaaaccttttttaaattagataaaTTTAGCAATCTGCGAACATTAGACTTATCAGTAGGATTCAATGACGTGCAAAGACGTGTAAATCCATATGAAGcacattaaattttaattaaattcaattaaattacttttaacaagtatttgttttgttcatgaCCTTAAATTGAATTGCTCCTAGGAGGCAATTAAGGAATGAAATTAAAACCCCCAAACTGTGCaggtatgtatatgtataaactaaagagaaataaaatggAGACTGTGAAGTGtacaattttaacaaaaaatgtttaatacacTTATTAGTCCATTTAGGAACAAAACAATTCAGCATTCAAACACTAATTTGGAAGGGCTGACCTATATATTCATCTCTGTCACTAAACTtagtattttttagtttttctgttattttttatattttccaaagATTTTGTGCTCTCCATTCTGCAGATGGGCTCATGAGAGCTTCTGTCTCAGCTGATGTAAattctctcttcttccattcttCCTCATTCATTCTCTTGTtgtattcttcttttttatctCCTGTTTTTTCACTCCCACGTTGTTGTCTCTACATTTCATGCTTTAGCTGGGAATCACAAAAAGAtgagttttaataaacataagaacactgagcaaataaaaaataaaaagcaaataaacatgACTTTTTGAAACCCTGTTTTTGGGTATCAGCAGGGCTGGGTATGGTCCAGTACCTCACAACACGATAAGTATCTTAATGCACACACAATTATACAATATTGTGCTATTTCGCAAAGCAccatattatttttgcattgcaaacaaatcaaaaggaaacaaaaatagcaagtgtttttttaaagccaattttgtctttaaaaaaatgagcatGTCCACAATTGTAACCGTTTCATCTTTATTGGAACTTAACATCCACATTTCCTTAAATTACAATACATAGTATTGTAATATGTATTAATTCACAACACTGTAACTTGATACtccaacaaaataatatatttgtattaactTGATTTACACAAGCAGAACATGTTCTTGGAACATGATTTACCCAAACAGGACATTCTTGGATCATCCTTAATGGTTCTGGAACAATCAGATGTTAGGGTTATGCTAAGGGTTGCACATTATCTATCCACAATAAATAATTACCATGCACTTCAGCATGAAGTTAGTTCatgtcatataaaataaaatgtttatattagtaGAAATGAGCCAGTCTTTCTATTGAACTGACAATACAAGAGAAGACAAATGAGAAGTTTAGCATAAATTTCACTGATGCTTCATGCATGCAAGGCTAAATTACAGACCACATGCTCTCTCAAAGCAACACCAACCAAAACAGTAAACATGCAAAAGGATAGAAACATTTAGACATCCATAAAGACAGGTACAGCACGGCTATTATTGGATACCTTGCTTCTGTTACTTGAAAACTGGGAGATGAGGACTGTTTAGgctCCAGGTAGTTGCGGGCAACAAACTTCAGCACCTCATCAATGAGGATGACGGGGAAAGAAAGCTTCAGTACCACCATCCACTGTTCTGTGTTCAAGTGAGTTAGTTTGAAAATCATGAAGTGGAGGGACATGGAGAGCGTTGAACATCTCAATTGTGACCAGGACAGACAGGGCCATGTATCTGAAGAACAGCCAGCCAGAGATCAGGGGTTCTTTGGCAGAGCGGGGAGGCTTGCCCATGATATCAAGATCAGGGGGGTTGAAGCCCAGGGCAGTGGCAGGCAGACCATCAGTCACCAAGTTCACCCACAGCAGCTGGACTGGGATCAGAGCCTCAGGCAGACCCAGGGCAGCAGTCAGGAAAATACTACGACCTCCCCAACATTTGAAGAAATCAGGTAACGGATGAACTGCTTCATGTTGTTGTAAATGGCTCTGCCTTCCTCAACGGCAGCCACAATAGAAGAGAAGTTGTCATCGGCCAGGACCATCTCAGAGGCTGACTTGGCAACGGCAGTGCCAGAGCCCATGGCAATGCCAATTTCTGCCTTTTTCAAGGCAGGGGCATCGTTGACACCATCACCCATAGCAGTAATCTCATCATAGCCCTGCAGGAACTCAACGATCTTAGACTTGTGGGAGGGCTCAACACGGGCAAAGCAGCATGCCTTGCAGACAGCTTCGCTCTGTTCACCGCGGGGCAGGTCATCAAACTCTCTGCCGGTATAAGCTTTGCCAGTTACATCCTCATCCTCAGAAAAGATGCCAATACGACGGCAGATGGCCACAGCTGTGCCCTTCGTACCAGTGATCATGATAACACGAATGCCAGCAGCCCTGCACAGTTCAATGGAGCCAGTAACCTCTTTACGGGGGGGATCCAACATACCGACACAGCCAACGAAGGTCAAGTCAGTCTGAACAAGACAGTAAAGTATTAAGACATTTATTAAACCTTATCAATGCTGTACCACCACATATGGAGCATGTAGTCACTTTCaaattttgttgttattatattattgatattacaATTGTGAGAGTTTGGATACAGTCTATTGCACTAAGTGAGTACAGCATTTTCTTTACTCAAGAAACCAGAGAATAGTGTCTTAAGACTTTTAATGAGATTCTGACCAAATATATTCAAGAAAAGGGAAAGCTTATCACTCACATCCATCAAAGATACCACTCTGGCAACTTTACTAGCTAGTTTGACTAAGTTTTTTTGGGCAATTTTCAGGCTTTACCAGCCTGACAAGGGAGAATGGATGTTTTTCATATTCACCTCATAGTCAGCAAATTTAGTAGAGTCCTCAAGGTTCATTTCTTCAACCTTCAGGGGATTGTCACGGGTGGCAAGTGCCAGGCAACGCAGAGTGTCACGGCCAGTACCCCACTCCTTGATGACGGACATGATCTTATCTTTAACAAGGCCAGTCAGGGGTACGCGAGTGGAACCAACACGCACATAGGAACACCTGTCAATCACACCCTCTGGAGCGCCTTCACAAACATTTTGCTGCCTGCATCACCCTTGGTAGGGGTACAGTACACAGACATGGATTTCCTATCACGGGAGAACTCCAGAGTGAAATTCTTCTTCATTAGCTGCTTCACAACACAGCAGGCATTTGCTCTCTCAATCTTGGACAGGCTGTTGACATTGGTCTTAAAAACATTCATCTTCTCAACCAAGCAGCACAAAGCGGTTTCAGTGGCCTCACCGACCTTCTCATAGATCTTCTTGGACTcatataaaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU126767 lncRNA downstream 869202 4452755 ~ 4453276 (-) True G85572
TU126762 lncRNA downstream 909116 4412624 ~ 4413362 (-) False LOC122355055
TU126764 lncRNA downstream 910278 4411340 ~ 4412200 (-) True G85569
TU126745 lncRNA downstream 1009430 4312579 ~ 4313048 (-) True G85553
TU126743 lncRNA downstream 1010574 4311453 ~ 4311904 (-) True G85551
TU127055 lncRNA upstream 26172 5423084 ~ 5426127 (-) False lsm5
TU127056 lncRNA upstream 26172 5423084 ~ 5426511 (-) False lsm5
TU127129 lncRNA upstream 330392 5727304 ~ 5731090 (-) True G85868
TU127155 lncRNA upstream 413745 5810657 ~ 5814446 (-) True G85889
TU127161 lncRNA upstream 423437 5820349 ~ 5821178 (-) True G85891
XM_043253609.1 mRNA downstream 267363 4929813 ~ 5055115 (-) True LOC122355389
XM_043253608.1 mRNA downstream 279715 4934872 ~ 5042763 (-) False LOC122355389
XM_043253007.1 mRNA downstream 905581 4412573 ~ 4416897 (-) True LOC122355055
XM_043254333.1 mRNA downstream 1017263 4299048 ~ 4305215 (-) True LOC122355775
XM_043253162.1 mRNA downstream 1085249 4232549 ~ 4237229 (-) True LOC122355129
XM_043253097.1 mRNA upstream 18987 5415899 ~ 5419866 (-) True emc9
XM_043254308.1 mRNA upstream 26591 5423503 ~ 5425993 (-) False lsm5
XM_043254413.1 mRNA upstream 80610 5477522 ~ 5486280 (-) True ghdc
XM_043253798.1 mRNA upstream 90888 5487800 ~ 5504829 (-) False stat5b
XM_043253797.1 mRNA upstream 90888 5487800 ~ 5504829 (-) True stat5b
unassigned_transcript_1919 other downstream 925985 4396412 ~ 4396493 (-) True trnal-uag_71
unassigned_transcript_1918 other downstream 929323 4393074 ~ 4393155 (-) True trnal-aag_72
unassigned_transcript_1917 other downstream 930642 4391754 ~ 4391836 (-) True trnal-uag_70
unassigned_transcript_1916 other downstream 932791 4389600 ~ 4389687 (-) True trnal-aag_71
unassigned_transcript_1915 other downstream 932950 4389446 ~ 4389528 (-) True trnal-uag_69
TU127052 other upstream 26172 5423084 ~ 5426511 (-) False lsm5
TU127053 other upstream 26172 5423084 ~ 5426127 (-) True lsm5
TU127203 other upstream 588077 5984989 ~ 5987780 (-) True G85925
TU127212 other upstream 594001 5990913 ~ 6007107 (-) True G85930
XR_006252216.1 other upstream 654811 6051723 ~ 6054353 (-) False LOC122355418

Expression Profile