RNA id: TU127052



Basic Information


Item Value
RNA id TU127052
length 988
RNA type TUCP
GC content 0.37
exon number 6
gene id lsm5
representative False

Chromosome Information


Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 5423084 ~ 5426511 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


CTGTCGGTGCATCAGTGCCATCAACTGAGCTGGAGCGAGGAGAGGCCAACGAAAGAGTCAACGCTTGCTTCAGTCTGTTATCAAAATGGCGGCAGTCGCGGCAACGAATCCCTCGCAGCTTTTACCTCTCGAGCTGGTGGATAAATGCATCGGCTCACGGATTCACATCGTCATGAAAAATGATAAAGAGATTGTGGGAACCCTGCTCGGATTTGATGACTTTGTCAACATGGTTCTTGAGGATGTGACAGAGTTTGAAATCACTCCAGAAGGAAGAAGAATCACAAAGCTGGATCAGATTTTACTCAATGGCAATAACATCACAATGTTGATTCCTGGAGGAGAAGGACCAGAAGTTTGAGAAATATGTAGCCCcttccacaaaataaaaatacattttatgttcttGTTTAATTATAGAAACCTGAAAATTGATCACTCactgttttcaaacatttgtttttattttacgaGGAGTTTTTCCACATTAGTTCTTTGTATTCCTTAAGTGATCCAAAAAgattttgtaaacatttgttgcttgttacaataaaacagataaaatgaaATGGGCTAAGTTTTATGTTATATAGCATTTTGTGTGAAAGGTTCCTGAAgtgtgaatgaataaaataaggaTCATTTGTGAAATCGTCATTTTTAACGtggttctttattttaaaaatgtcacattttgcgaatttgtgcattttcctggtttattttgcatttgctgAAATAGATGTATATGTAGGTTTACATGAATTCCATCACTTGTACCACAACGCACTGTATGTTTATGAATGGCTTAACATGGTTACTAAAGACACATCTCTATAGAGTGTCATGAATCATTTGAAGAAATGAGAAATTCTGAAATCGGATGTAGTTGTAGAACTGTGCTTGTCTCAGTACATGGAGGGCTTCTCTTCTCCTTTAGGATTCGTCACTTTCTCCAGATTCTTGCTGATGACATCATAGAGTTCAG

Function


GO: NA

KEGG: NA

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TU126767 lncRNA downstream 969808 4452755 ~ 4453276 (-) True G85572
TU126762 lncRNA downstream 1009722 4412624 ~ 4413362 (-) False LOC122355055
TU126764 lncRNA downstream 1010884 4411340 ~ 4412200 (-) True G85569
TU126745 lncRNA downstream 1110036 4312579 ~ 4313048 (-) True G85553
TU126743 lncRNA downstream 1111180 4311453 ~ 4311904 (-) True G85551
TU127129 lncRNA upstream 300793 5727304 ~ 5731090 (-) True G85868
TU127155 lncRNA upstream 384146 5810657 ~ 5814446 (-) True G85889
TU127161 lncRNA upstream 393838 5820349 ~ 5821178 (-) True G85891
TU127162 lncRNA upstream 410861 5837372 ~ 5837674 (-) True G85892
TU127163 lncRNA upstream 412048 5838559 ~ 5838957 (-) True G85893
XM_043253097.1 mRNA downstream 3218 5415899 ~ 5419866 (-) True emc9
XM_043253686.1 mRNA downstream 55941 5360364 ~ 5367143 (-) True pelo
XM_043253842.1 mRNA downstream 92851 5280381 ~ 5330233 (-) False ccser2b
XM_043254413.1 mRNA upstream 51011 5477522 ~ 5486280 (-) True ghdc
XM_043253798.1 mRNA upstream 61289 5487800 ~ 5504829 (-) False stat5b
XM_043253797.1 mRNA upstream 61289 5487800 ~ 5504829 (-) True stat5b
XM_043253256.1 mRNA upstream 108662 5535173 ~ 5540436 (-) True foxh1
XM_043253870.1 mRNA upstream 138097 5564608 ~ 5600663 (-) True adam11
TU127021 other downstream 26172 5322478 ~ 5396912 (-) False G85779
TU127027 other downstream 26172 5322478 ~ 5396912 (-) True G85779
TU127020 other downstream 26172 5390608 ~ 5396912 (-) False G85779
unassigned_transcript_1919 other downstream 1026591 4396412 ~ 4396493 (-) True trnal-uag_71
unassigned_transcript_1918 other downstream 1029929 4393074 ~ 4393155 (-) True trnal-aag_72
TU127203 other upstream 558478 5984989 ~ 5987780 (-) True G85925
TU127212 other upstream 564402 5990913 ~ 6007107 (-) True G85930
XR_006252216.1 other upstream 625212 6051723 ~ 6054353 (-) False LOC122355418
XR_006252215.1 other upstream 637787 6064298 ~ 6073432 (-) False LOC122355418
TU127372 other upstream 1243808 6670319 ~ 6671247 (-) True G86049

Expression Profile


TU127052 Expression in all Baseline Samples

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The chart has 1 Y axis displaying values. Range: 0 to 30.
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TU127052 Expression in each Bioproject

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TU127052 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 300.
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