RNA id: TU127053


Basic Information

Item Value
RNA id TU127053
length 1069
RNA type TUCP
GC content 0.36
exon number 5
gene id lsm5
representative True

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 5423084 ~ 5426511 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTCATTGCTATCTGAACGAACGGAGGAGCAGCACCAATTATTCATCAATAGTAATATAAATCTATGGCCGCACCCCTTCAGTTTATACAGCTATCGATGCCTGCTAATATCGATTTCTCATGCCTTATTTTATTCTCTTGGCCGATTACTGAGGTCTGTTATCAAAATGGCGGCAGTCGCGGCAACGAATCCCTCGCAGCTTTTACCTCTCGAGCTGGTGGATAAATGCATCGGCTCACGGATTCACATCGTCATGAAAAATGATAAAGAGATTGTGGGAACCCTGCTCGGATTTGATGACTTTGTCAACATGGTTCTTGAGGATGTGACAGAGTTTGAAATCACTCCAGAAGGAAGAAGAATCACAAAGCTGGATCAGATTTTACTCAATGGCAATAACATCACAATGTTGATTCCTGGAGGAGAAGGACCAGAAGTTTGAGAAATATGTAGCCCcttccacaaaataaaaatacattttatgttcttGTTTAATTATAGAAACCTGAAAATTGATCACTCactgttttcaaacatttgtttttattttacgaGGAGTTTTTCCACATTAGTTCTTTGTATTCCTTAAGTGATCCAAAAAgattttgtaaacatttgttgcttgttacaataaaacagataaaatgaaATGGGCTAAGTTTTATGTTATATAGCATTTTGTGTGAAAGGTTCCTGAAgtgtgaatgaataaaataaggaTCATTTGTGAAATCGTCATTTTTAACGtggttctttattttaaaaatgtcacattttgcgaatttgtgcattttcctggtttattttgcatttgctgAAATAGATGTATATGTAGGTTTACATGAATTCCATCACTTGTACCACAACGCACTGTATGTTTATGAATGGCTTAACATGGTTACTAAAGACACATCTCTATAGAGTGTCATGAATCATTTGAAGAAATGAGAAATTCTGAAATCGGATGTAGTTGTAGAACTGTGCTTGTCTCAGTACATGGAGGGCTTCTCTTCTCCTTTAGGATTCGTCACTTTCTCCAGATTCTTGCTGATGACATCATAGAGTTCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU126767 lncRNA downstream 969808 4452755 ~ 4453276 (-) True G85572
TU126762 lncRNA downstream 1009722 4412624 ~ 4413362 (-) False LOC122355055
TU126764 lncRNA downstream 1010884 4411340 ~ 4412200 (-) True G85569
TU126745 lncRNA downstream 1110036 4312579 ~ 4313048 (-) True G85553
TU126743 lncRNA downstream 1111180 4311453 ~ 4311904 (-) True G85551
TU127129 lncRNA upstream 301177 5727304 ~ 5731090 (-) True G85868
TU127155 lncRNA upstream 384530 5810657 ~ 5814446 (-) True G85889
TU127161 lncRNA upstream 394222 5820349 ~ 5821178 (-) True G85891
TU127162 lncRNA upstream 411245 5837372 ~ 5837674 (-) True G85892
TU127163 lncRNA upstream 412432 5838559 ~ 5838957 (-) True G85893
XM_043253097.1 mRNA downstream 3218 5415899 ~ 5419866 (-) True emc9
XM_043253686.1 mRNA downstream 55941 5360364 ~ 5367143 (-) True pelo
XM_043253844.1 mRNA downstream 92851 5280381 ~ 5330233 (-) True ccser2b
XM_043254413.1 mRNA upstream 51395 5477522 ~ 5486280 (-) True ghdc
XM_043253798.1 mRNA upstream 61673 5487800 ~ 5504829 (-) False stat5b
XM_043253797.1 mRNA upstream 61673 5487800 ~ 5504829 (-) True stat5b
XM_043253256.1 mRNA upstream 109046 5535173 ~ 5540436 (-) True foxh1
XM_043253870.1 mRNA upstream 138481 5564608 ~ 5600663 (-) True adam11
TU127021 other downstream 26172 5322478 ~ 5396912 (-) False G85779
TU127027 other downstream 26172 5322478 ~ 5396912 (-) True G85779
TU127020 other downstream 26172 5390608 ~ 5396912 (-) False G85779
unassigned_transcript_1919 other downstream 1026591 4396412 ~ 4396493 (-) True trnal-uag_71
unassigned_transcript_1918 other downstream 1029929 4393074 ~ 4393155 (-) True trnal-aag_72
TU127203 other upstream 558862 5984989 ~ 5987780 (-) True G85925
TU127212 other upstream 564786 5990913 ~ 6007107 (-) True G85930
XR_006252216.1 other upstream 625596 6051723 ~ 6054353 (-) False LOC122355418
XR_006252215.1 other upstream 638171 6064298 ~ 6073432 (-) False LOC122355418
TU127372 other upstream 1244192 6670319 ~ 6671247 (-) True G86049

Expression Profile