RNA id: TU127155


Basic Information

Item Value
RNA id TU127155
length 3726
lncRNA type inter_gene
GC content 0.34
exon number 2
gene id G85889
representative True

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 5810657 ~ 5814446 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGGGcactgaatttaattaataaacaagtttcacaatttgcattgaattactgaaataaatgaacttttccacagTGTTCTAATTTATGGAGATGCTTGTACTGTGTATCTAAAAACAGTATCATTGGTAGTACATACATTTTACTTCAATATACAGCACGTTTCTGATCAAGTCAGGTGTCATCACACTTTATACAGTATTAATtgtatcaaaaatataaaaaataataatcctaATATTgcagtaatataatatagaaattaaAACAATCTTCCAATTATGCAAACAACCTTCAATTCTGCTAAAAAAGGAACAGAGTGTATTATGTGGacaaatttaaaactatttgtaGGGCAGAACCTATTTACATTAGCTCCACCCACCAATGCCTGGCTGTGATAAACAGCacgaaaaaaaccccacatgcaCAAAAAGGCATTGTGACAAAAACCTACATAAAAGCACGCCTGTTTTATTAAACACTGTATTAATTAGGTGAGCATGATTTCACCAAGTAGCCTACAAGTTGTCCCTAATGTAATTGTTCAGTTAAAGACAGCTCAGTTTCAGCAGATTCAGTTCTGTCAAATATGTCAATTtgattaattatgaaattatgagTTTAATTGGACAagattatgtattatttacttCTATGAGCCTTATTAACAAGCctttgtaaacatttgtttgtaAGGTAACAGACATTTGTTTTTAAGGTAACAGACTCGACAGctctgctgaataaaagtttgcatttgtcATGTGATAATTAAGCATACTACTCTAAAACATTTGTTACTTATTGTATACTGTTTCACACAATATTCCTTAAAAATTACCAGGCAGCATACACTGTATACTGGGCAGTAAGCAAGTACGCCATTTCAAACACAGCCCATGTATTTTCAAATAAGCCTTAATGACTTGATTGGCTGGATCAGGtctgtttaattagggttgcatctaggGCTATGGCCCTCAAGGACTTAAGACACCCCTGGCCTAAATCAAGACAATTATGAGGTACCATCATATGGATTAATTATTCAGCTTGCACAACATAAGCAGTGCAGCCAAAGAAACAAAGAACTAAATTTCAGGTACACTAAGGAAGTAGAAAAAATCTCCAAACTGAAATGGACACTGTGATTTCTGTTAAActtactttaaaatgaacataaattgGCTATGAAACAAACTGTGATTATAGTATTTCCTTATTGTGAcctaaaacattacaatatgtAGGGTAGTTCTTGGTTTTGTCCATCATGGCCCATTGACACTGGTTAATTGATACAGCTGCAACACGTGAAACTCATTAGGCTTTAAAAAGCCAGTGATTTGGCAAGTAATGGAAATTTGTATTTGAGTATGTAATTTTCCACTTTAATCAAATGTCATTTTCCACCTTATTCCACTCTGTTCAAAAGTGGAGATTAGACTGCCTCTAAGTCTATTTTGGatgcactttttatatttcagattgtttttttcctataatatttgaaaattccTTTTATTGTACCAGAGCATTACCCTGCGTTTCCCTTATCTTGGAGTCTCATCTTAAAAAGCATAAGACTATATTTAATGTTTGCCCACaataatttcaaacatttctaaCAACATACAGTATAGTGCATAATGTAATGCACCAGAGTAAAAAGAAGAATACCAAAAATACATTGGTATTATTGATGAACAAGTGGTCTTTTAAACAATAAGAGTAACACTTTTCCCAGAATACATTATAAAGGGTTATTAAAGGGCATAacacattataattattcataatgtgcaATGTAATACAATATATCTTGTTGTAGGTAATTataaccaaatttaaaatgtatagagTAAATTGTATAGAGCAGAGTGAATTGATGTAGTGttgtaatatattaactatattaacTGTAAGAGATTGTACAATGCATAAGGTGCATTACAAGgcttaattaatgcattataactacttttacaagtgttttttttttcaaacagatCATGAcaccaaatatttatattcataaaatattatacagcaTTATTACCTATATTATAAGTTTTATAACTAAAAGTATTGCTGAACTTGATTTTATAATATGGATAATTGGATAATGGATTATTTTTGTAGTCCAAGGCTTTCAAACTATTCCTAGACTCTCCCCAGTACTGCACATttttgatttctctctctttaaacCCACATAAATTAGTCATCAGctgatcaatatatatatatatatatatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtaaaatccAATATGATTGATAGGGCACAGAATCTCCTTCTAAAATCTGTATTTGTTTATCAATCACTGTTATTCATCAATGATTTTCAAACCTGTCCTAGTGTGCCCCCACCCTTGTACATTTTGGATGTCTCCTCTATCAGACAccaatacagatttaaaaagcacttaaaagtatgcaaatacaaatgattttaaAGCTATGCCATTCAGTAACATTCTAGAGAATTTGGCAAGGCCCATTTTCTGCAGCATGACAATGCATTTGtgcacaattttatatataacaatgttaatataaaattgcTTTTCTCGGTCTGATGTAGACTTAACCATGGGCCAAACCTGATCGCTGTTGAGTTTAGGATAAACGCAACATCAAAGTCTGACTGTCACAGTTCACAGGTttgcttcctctttctctctccctcctgtGTGTGTCTTTACCCTGCTGAGTCTTGACTACTTTCAACTCATTTTGCTCATTTCCCACCTGGTCCTTGACTGTTTATACTCAATGCTGTGTCTGCGCTACCAGTGTAAAATTACACCTGCACTTGTGCTGAATTCTGTTTGCTGCTGATCTCTgctaatttaataaattgtttacatattcagttaaatacttttttaaacaatgttttctgTGACAATGCCCTCACATCTTCTAAATCTTCTAAATGGCAACAAATTGCAGAATCCCTGTAGAACATTGTGTGGTAAAGCATTAAAGGTGCACTATGCAGGATTTTCTGTTCTTGTTCAATTATAGTATTCAAACTTGACCAGAATGCTCTTCAATGCCTCTGACATGGTATCAGCTTCAAGAACACGTGCAGCATCTTGTAAAAAATTGTAGCATAGAAATGCACAAACACTACCAGACAATAGTAGATCATAAGTAATAGTTTAAAGAAATTTGTAGTATATATTTGTACTATACTGTACTATACTatacttcatttgtttttttggggggtttttttttggaaaagccCTTCATAGAGCACCTTTAAAATTAGGAGATAGGAATATTTATATCTGTTATTTACAGTAGGAGTGTGTTCACATAAAATACGTTacaatgtatatttgtatatttgttttgttttgttttgtatgacATGCTGTATGGCAGTTGAATAATCTGCTTGATCATCTTTCCTCACTCTCCTCAACCAAAGAGTTTGATGAAGCAGGGGTGGCAATATGGTTTGTTGTCCTGCTCTTTGAAGCAGCCTTTACTAAGGGGTTTCAGGCAGAAGTGGCACACCAGATGTTGTGGATGAAACTTGGCACCCATCGCGGTAACACAGCGCCCCAGGATTGGCTGCTGGCATGCCTGACACACACTTCCCCTGGACTGATGGTAGTGAGCTTCACACAAAGGTTGCCCCTCATGTTCAAAGAAACTCCCGTTCACAAATGGGCTATAGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU127129 lncRNA downstream 79567 5727304 ~ 5731090 (-) True G85868
TU127056 lncRNA downstream 384146 5423084 ~ 5426511 (-) False lsm5
TU127055 lncRNA downstream 384530 5423084 ~ 5426127 (-) False lsm5
TU126767 lncRNA downstream 1357381 4452755 ~ 4453276 (-) True G85572
TU126762 lncRNA downstream 1397295 4412624 ~ 4413362 (-) False LOC122355055
TU127161 lncRNA upstream 5903 5820349 ~ 5821178 (-) True G85891
TU127162 lncRNA upstream 22926 5837372 ~ 5837674 (-) True G85892
TU127163 lncRNA upstream 24113 5838559 ~ 5838957 (-) True G85893
TU127200 lncRNA upstream 143132 5957578 ~ 5957779 (-) True G85922
TU127201 lncRNA upstream 143849 5958295 ~ 5958527 (-) True G85923
XM_043254385.1 mRNA downstream 48046 5748277 ~ 5762611 (-) True pkmyt1
XM_043254386.1 mRNA downstream 48054 5748277 ~ 5762603 (-) False pkmyt1
XM_043253671.1 mRNA downstream 64127 5736592 ~ 5746530 (-) True sult1st6
XM_043254045.1 mRNA downstream 77369 5703313 ~ 5733288 (-) True avl9
XM_043254041.1 mRNA downstream 120268 5685526 ~ 5690389 (-) True buc2l
XM_043253168.1 mRNA upstream 60639 5875085 ~ 5878221 (-) True mylpfb
XM_043253059.1 mRNA upstream 203545 6017991 ~ 6022156 (-) True neurod2
XM_043253681.1 mRNA upstream 236722 6051168 ~ 6078068 (-) True LOC122355418
XM_043253679.1 mRNA upstream 383036 6197482 ~ 6280348 (-) False LOC122355417
XM_043253675.1 mRNA upstream 383036 6197482 ~ 6280348 (-) False LOC122355417
TU127052 other downstream 384146 5423084 ~ 5426511 (-) False lsm5
TU127053 other downstream 384530 5423084 ~ 5426127 (-) True lsm5
TU127021 other downstream 413745 5322478 ~ 5396912 (-) False G85779
TU127027 other downstream 413745 5322478 ~ 5396912 (-) True G85779
TU127020 other downstream 413745 5390608 ~ 5396912 (-) False G85779
TU127203 other upstream 170543 5984989 ~ 5987780 (-) True G85925
TU127212 other upstream 176467 5990913 ~ 6007107 (-) True G85930
XR_006252216.1 other upstream 237277 6051723 ~ 6054353 (-) False LOC122355418
XR_006252215.1 other upstream 249852 6064298 ~ 6073432 (-) False LOC122355418
TU127372 other upstream 855873 6670319 ~ 6671247 (-) True G86049

Expression Profile