RNA id: TU127201



Basic Information


Item Value
RNA id TU127201
length 233
lncRNA type inter_gene
GC content 0.26
exon number 1
gene id G85923
representative True

Chromosome Information


Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 5958295 ~ 5958527 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


ttatgtttcattttatttatttgtttattgaggAATGCATTGCAATGAAATGGGAGAGGCTGatacttttttgtaaataaacttttaaaataaacaggaaaagaaaaaataagaaaaatgtggaaacattttgatgtttgactaaacaaactttttttagtttttgaattgTCACAAATGAGGAAGTGATGAAGTGCACAACAAGTGAATAATTAAACATGcctaaagaaaac

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU127200 lncRNA downstream 516 5957578 ~ 5957779 (-) True G85922
TU127163 lncRNA downstream 119338 5838559 ~ 5838957 (-) True G85893
TU127162 lncRNA downstream 120621 5837372 ~ 5837674 (-) True G85892
TU127161 lncRNA downstream 137117 5820349 ~ 5821178 (-) True G85891
TU127155 lncRNA downstream 143849 5810657 ~ 5814446 (-) True G85889
XR_006252182.1 lncRNA upstream 13946 5972473 ~ 5981072 (-) True LOC122355182
XR_006252183.1 lncRNA upstream 13946 5972473 ~ 5977519 (-) False LOC122355182
XR_006252181.1 lncRNA upstream 13946 5972473 ~ 5977519 (-) False LOC122355182
TU127207 lncRNA upstream 29334 5987861 ~ 5988339 (-) True G85929
TU127211 lncRNA upstream 48673 6007200 ~ 6012111 (-) False G85930
XM_043253168.1 mRNA downstream 80074 5875085 ~ 5878221 (-) True mylpfb
XM_043254385.1 mRNA downstream 195684 5748277 ~ 5762611 (-) True pkmyt1
XM_043254386.1 mRNA downstream 195692 5748277 ~ 5762603 (-) False pkmyt1
XM_043253671.1 mRNA downstream 211765 5736592 ~ 5746530 (-) True sult1st6
XM_043254045.1 mRNA downstream 225007 5703313 ~ 5733288 (-) True avl9
XM_043253059.1 mRNA upstream 59464 6017991 ~ 6022156 (-) True neurod2
XM_043253681.1 mRNA upstream 92641 6051168 ~ 6078068 (-) True LOC122355418
XM_043253679.1 mRNA upstream 238955 6197482 ~ 6280348 (-) False LOC122355417
XM_043253675.1 mRNA upstream 238955 6197482 ~ 6280348 (-) False LOC122355417
XM_043253676.1 mRNA upstream 238955 6197482 ~ 6272677 (-) False LOC122355417
TU127052 other downstream 531784 5423084 ~ 5426511 (-) False lsm5
TU127053 other downstream 532168 5423084 ~ 5426127 (-) True lsm5
TU127021 other downstream 561383 5322478 ~ 5396912 (-) False G85779
TU127027 other downstream 561383 5322478 ~ 5396912 (-) True G85779
TU127020 other downstream 561383 5390608 ~ 5396912 (-) False G85779
TU127203 other upstream 26462 5984989 ~ 5987780 (-) True G85925
TU127212 other upstream 32386 5990913 ~ 6007107 (-) True G85930
XR_006252216.1 other upstream 93196 6051723 ~ 6054353 (-) False LOC122355418
XR_006252215.1 other upstream 105771 6064298 ~ 6073432 (-) False LOC122355418
TU127372 other upstream 711792 6670319 ~ 6671247 (-) True G86049

Expression Profile