RNA id: TU127207


Basic Information

Item Value
RNA id TU127207
length 479
lncRNA type inter_gene
GC content 0.60
exon number 1
gene id G85929
representative True

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 5987861 ~ 5988339 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

gtattgttcaggtctggtgGCGTGTGACGAGtttagcctcgttaccgtcgccgttaagtaccggacgcgcctctcctcgggagaccggtctcttcccccgtgcatgcacgctggtgtcctcgtgggtccaggaagggtgcgcgatggacctcaccccgccgtccgagaacacacagctcatcccactctgccgcccggagcaaCGAAGCGATGGAGATGCCGCGAAAGAAGCCGCCGCCCgtcgcgccccggaccagaagAAGGGGAGCGCGTgtgaccgccggactccgccccttacctggacccttcccccctggaacacggcctaaacCTGCACTTTACccgcagcacgacgaggacaccagatcccccttttatttggacattttcccccttggacactttattttgtatttttattttttcaataaaaagcctctccgaggcctgatgCCACGCCCattgtgtctgtcgttggc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006252182.1 lncRNA downstream 6789 5972473 ~ 5981072 (-) True LOC122355182
XR_006252183.1 lncRNA downstream 10342 5972473 ~ 5977519 (-) False LOC122355182
XR_006252181.1 lncRNA downstream 10342 5972473 ~ 5977519 (-) False LOC122355182
TU127201 lncRNA downstream 29334 5958295 ~ 5958527 (-) True G85923
TU127200 lncRNA downstream 30082 5957578 ~ 5957779 (-) True G85922
TU127211 lncRNA upstream 18861 6007200 ~ 6012111 (-) False G85930
TU127225 lncRNA upstream 41394 6029733 ~ 6030024 (-) True G85934
TU127226 lncRNA upstream 45142 6033481 ~ 6033769 (-) True G85935
TU127230 lncRNA upstream 61861 6050200 ~ 6050650 (-) True G85939
TU127263 lncRNA upstream 108721 6097060 ~ 6097867 (-) True G85966
XM_043253168.1 mRNA downstream 109640 5875085 ~ 5878221 (-) True mylpfb
XM_043254385.1 mRNA downstream 225250 5748277 ~ 5762611 (-) True pkmyt1
XM_043254386.1 mRNA downstream 225258 5748277 ~ 5762603 (-) False pkmyt1
XM_043253671.1 mRNA downstream 241331 5736592 ~ 5746530 (-) True sult1st6
XM_043254045.1 mRNA downstream 254573 5703313 ~ 5733288 (-) True avl9
XM_043253059.1 mRNA upstream 29652 6017991 ~ 6022156 (-) True neurod2
XM_043253681.1 mRNA upstream 62829 6051168 ~ 6078068 (-) True LOC122355418
XM_043253679.1 mRNA upstream 209143 6197482 ~ 6280348 (-) False LOC122355417
XM_043253675.1 mRNA upstream 209143 6197482 ~ 6280348 (-) False LOC122355417
XM_043253676.1 mRNA upstream 209143 6197482 ~ 6272677 (-) False LOC122355417
TU127203 other downstream 81 5984989 ~ 5987780 (-) True G85925
TU127052 other downstream 561350 5423084 ~ 5426511 (-) False lsm5
TU127053 other downstream 561734 5423084 ~ 5426127 (-) True lsm5
TU127021 other downstream 590949 5322478 ~ 5396912 (-) False G85779
TU127027 other downstream 590949 5322478 ~ 5396912 (-) True G85779
TU127212 other upstream 2574 5990913 ~ 6007107 (-) True G85930
XR_006252216.1 other upstream 63384 6051723 ~ 6054353 (-) False LOC122355418
XR_006252215.1 other upstream 75959 6064298 ~ 6073432 (-) False LOC122355418
TU127372 other upstream 681980 6670319 ~ 6671247 (-) True G86049
TU127438 other upstream 1115541 7103880 ~ 7104218 (-) True G86108

Expression Profile