RNA id: TU127225


Basic Information

Item Value
RNA id TU127225
length 292
lncRNA type inter_gene
GC content 0.53
exon number 1
gene id G85934
representative True

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 6029733 ~ 6030024 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

catcttttaaaaatggtacTTTTTCTGAGTATAGATGACACCCCCAGGGTCAACATCCTTCTTATGGTAAAGCAGTCCCTAAAGGTCATATCTTTATGGGCCAAgatgccgggctgtttatccACTTTGACTGCCGTTCGGAGGAAGCCAGGAGAAGCCGCTGGGAGAAGCCGCTGCCCCTAGCGCCCCAAACCAGAGAGGGGAGCGCATGTGGCCGCcagactccgccccttacctggacccttcccacTGGAACGAGGATACCAGTTCCcctgtttattttggacacttt

Function

GO:

id name namespace
GO:0044085 cellular component biogenesis biological_process
GO:0042692 muscle cell differentiation biological_process
GO:0031497 chromatin assembly biological_process
GO:0048468 cell development biological_process
GO:0006323 DNA packaging biological_process
GO:0006325 chromatin organization biological_process
GO:0022607 cellular component assembly biological_process
GO:0006333 chromatin assembly or disassembly biological_process
GO:0051146 striated muscle cell differentiation biological_process
GO:0006334 nucleosome assembly biological_process
GO:0071824 protein-DNA complex subunit organization biological_process
GO:0065004 protein-DNA complex assembly biological_process
GO:0034728 nucleosome organization biological_process
GO:0071840 cellular component organization or biogenesis biological_process
GO:0030154 cell differentiation biological_process
GO:0010927 cellular component assembly involved in morphogenesis biological_process
GO:0055001 muscle cell development biological_process
GO:0055002 striated muscle cell development biological_process
GO:0014866 skeletal myofibril assembly biological_process
GO:0031032 actomyosin structure organization biological_process
GO:0071103 DNA conformation change biological_process
GO:0006996 organelle organization biological_process
GO:0007010 cytoskeleton organization biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0097435 supramolecular fiber organization biological_process
GO:0030239 myofibril assembly biological_process
GO:0048869 cellular developmental process biological_process
GO:0032989 cellular component morphogenesis biological_process
GO:0070925 organelle assembly biological_process
GO:0048646 anatomical structure formation involved in morphogenesis biological_process
GO:0030029 actin filament-based process biological_process
GO:0030036 actin cytoskeleton organization biological_process
GO:0061061 muscle structure development biological_process
GO:0016043 cellular component organization biological_process

KEGG:

id description
ko03050 Proteasome
ko05169 Epstein-Barr virus infection

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU127211 lncRNA downstream 17622 6007200 ~ 6012111 (-) False G85930
TU127207 lncRNA downstream 41394 5987861 ~ 5988339 (-) True G85929
XR_006252182.1 lncRNA downstream 48661 5972473 ~ 5981072 (-) True LOC122355182
XR_006252183.1 lncRNA downstream 52214 5972473 ~ 5977519 (-) False LOC122355182
XR_006252181.1 lncRNA downstream 52214 5972473 ~ 5977519 (-) False LOC122355182
TU127226 lncRNA upstream 3457 6033481 ~ 6033769 (-) True G85935
TU127230 lncRNA upstream 20176 6050200 ~ 6050650 (-) True G85939
TU127263 lncRNA upstream 67036 6097060 ~ 6097867 (-) True G85966
TU127332 lncRNA upstream 408876 6438900 ~ 6439334 (-) True G86017
TU127335 lncRNA upstream 410793 6440817 ~ 6441521 (-) True G86020
XM_043253059.1 mRNA downstream 7577 6017991 ~ 6022156 (-) True neurod2
XM_043253168.1 mRNA downstream 151512 5875085 ~ 5878221 (-) True mylpfb
XM_043254385.1 mRNA downstream 267122 5748277 ~ 5762611 (-) True pkmyt1
XM_043254386.1 mRNA downstream 267130 5748277 ~ 5762603 (-) False pkmyt1
XM_043253671.1 mRNA downstream 283203 5736592 ~ 5746530 (-) True sult1st6
XM_043253681.1 mRNA upstream 21144 6051168 ~ 6078068 (-) True LOC122355418
XM_043253679.1 mRNA upstream 167458 6197482 ~ 6280348 (-) False LOC122355417
XM_043253675.1 mRNA upstream 167458 6197482 ~ 6280348 (-) False LOC122355417
XM_043253676.1 mRNA upstream 167458 6197482 ~ 6272677 (-) False LOC122355417
XM_043253677.1 mRNA upstream 167458 6197482 ~ 6266681 (-) False LOC122355417
TU127212 other downstream 22626 5990913 ~ 6007107 (-) True G85930
TU127203 other downstream 41953 5984989 ~ 5987780 (-) True G85925
TU127052 other downstream 603222 5423084 ~ 5426511 (-) False lsm5
TU127053 other downstream 603606 5423084 ~ 5426127 (-) True lsm5
TU127020 other downstream 632821 5390608 ~ 5396912 (-) False G85779
XR_006252216.1 other upstream 21699 6051723 ~ 6054353 (-) False LOC122355418
XR_006252215.1 other upstream 34274 6064298 ~ 6073432 (-) False LOC122355418
TU127372 other upstream 640295 6670319 ~ 6671247 (-) True G86049
TU127438 other upstream 1073856 7103880 ~ 7104218 (-) True G86108
TU127575 other upstream 1358212 7388236 ~ 7388910 (-) True G86203

Expression Profile