RNA id: TU127264


Basic Information

Item Value
RNA id TU127264
length 207
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G85967
representative True

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 6098128 ~ 6098334 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ggcacgagacaaaaacaataataacagagtccagagacgtgacaacACCAAAGGGATCGTCATAATCCTGCTGTATTCCACAGACAcctaatacagttttaaaaacaaatcgtAATAGTTTGtgtgtcacgtctctggactgtgttattgtttttgtctcgtgccatgtactctctgtgccctaccttcccttcatgttaattgtat

Function

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU127179 lncRNA upstream 139894 5957894 ~ 5958234 (+) True G85905
TU127011 lncRNA upstream 276441 5821431 ~ 5821687 (+) True G85774
TU126989 lncRNA upstream 281813 5812249 ~ 5816315 (+) False LOC122355829
TU126935 lncRNA upstream 495947 5601474 ~ 5602181 (+) True G85713
TU126906 lncRNA upstream 601894 5495107 ~ 5496234 (+) True G85687
TU127269 lncRNA downstream 2828 6101162 ~ 6118513 (+) False G85971
TU127270 lncRNA downstream 2828 6101162 ~ 6118513 (+) True G85971
XR_006252162.1 lncRNA downstream 232003 6330337 ~ 6336029 (+) True LOC122355060
TU127348 lncRNA downstream 425626 6523960 ~ 6524390 (+) True G86033
TU127354 lncRNA downstream 470889 6569223 ~ 6569454 (+) True G86037
XM_043253407.1 mRNA upstream 144642 5886952 ~ 5953486 (+) True becn1
XM_043253408.1 mRNA upstream 144642 5886952 ~ 5953486 (+) False becn1
XM_043253410.1 mRNA upstream 144642 5899838 ~ 5953486 (+) False becn1
XM_043253648.1 mRNA upstream 234838 5840203 ~ 5863290 (+) True med1
XM_043254393.1 mRNA upstream 283670 5780592 ~ 5814458 (+) False LOC122355829
XM_043253015.1 mRNA downstream 226159 6324493 ~ 6391831 (+) True LOC122355059
XM_043253421.1 mRNA downstream 483254 6581588 ~ 6583943 (+) True LOC122355310
XM_043253999.1 mRNA downstream 701451 6799785 ~ 6935072 (+) False plxdc1
XM_043253996.1 mRNA downstream 701452 6799786 ~ 6961984 (+) True plxdc1
XM_043253998.1 mRNA downstream 701452 6799786 ~ 6961983 (+) False plxdc1
TU127259 other upstream 1396 6095948 ~ 6096732 (+) True G85962
XR_006252205.1 other upstream 144816 5886952 ~ 5953312 (+) False becn1
XR_006252206.1 other upstream 154548 5886952 ~ 5943580 (+) False becn1
TU126784 other upstream 1008490 5088925 ~ 5089638 (+) True G85587
TU126761 other upstream 1644853 4452855 ~ 4453275 (+) True G85567
TU127298 other downstream 116585 6214919 ~ 6216567 (+) True G85986
TU127334 other downstream 342487 6440821 ~ 6441526 (+) True G86019
TU127344 other downstream 423495 6521829 ~ 6522571 (+) True G86029
TU127497 other downstream 1204804 7303138 ~ 7304848 (+) False G86142
TU127500 other downstream 1209590 7307924 ~ 7308229 (+) True G86143

Expression Profile