RNA id: TU127298


Basic Information

Item Value
RNA id TU127298
length 1629
RNA type TUCP
GC content 0.54
exon number 2
gene id G85986
representative True

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 6214919 ~ 6216567 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

gccaggggttgtatatatatatatattgtggcgggaggagccaacgacagacacactGGCAGTGgcgtttattaacaaaaacatacaaaaataaagtgtccagggggaaaagtgtccaaataaacaGGTGTCCTTGTTGTCctgcaggggaagtgcaggtcagTTAGtgctccagggggaagggtccaggtaaggggcggagtctgGTGGCCGCACGCACTCCCCTCTCTGGTCCAGGGCTTCTGCCCGTGGCTTCTCTGTCGCTTCTTTCCTGTCGGCAGAtttgaagggataaacagcccggcatcctggcccggCATCCTGACCCGTCAGGGGTCATCGCCTGGACTAAGGAGTCCGACAGTCCCTTCACGctcccttcctggacccacgaggacaccagcgtgtaTGCACAGGGGAAGAGACCGTCTCTCAAGGAGAGGCACGCTCGGTATTTAACTTTACTAATTTAATACACTTCAGGTATGCCatgtcacacgccgccagacctgtccaataccacgcccctcctctcggacATGCCCACTCcagtcgggagcctggtgaagggcggcgaataaaggacgaggtgatgatgacaataaaggggaggggcagccgacttgTCACATTCCCTTCCTCAAGCGTCAACCCCGTCAAGCAGTCACtgcccacgcaggagtgctaccttcctcaaccaggctccagcggtcgaagtgggcggggcagggattcctctccgggcaactcccctctcgcaccgggacagagaaaccgggaattagtcgacaagctcaaccagccaccgggtaaatgacagtaaagcaagcgtcacttaccctttCTGGTGGTTGGGAGCGAGACTTCGTCGTTCCTCCGTCCCGGCGTGGGTATGAGCAagaggggatgacgtcatcagatgttgctcaactgtgccgtctaagctccgcgttgcccgcattctccaccagtgtggcTGGAGGAGCCAACGGCAGACATAGTGGGCGTGGTGttaggcctcggagaggcttttaattaaacaaaatatacaaaataaagtgtccaggggaaaagtgtccaaaataaatggGGAAACTGGTGTCATCGTCGTGGTAAGGGACGGagtcctcgggagaccggtctcttttGAGGAGAGGCGTGCTCGGTATTTAACGACGGCGGTGACGAGGCTCGatacacttcaggtgtgcctcgtcacacgccgccagacctgtccaacaccacgcccctcctctcaggCATGCCCACTCCcatcgggagcctggtgaagggcggcgaataaaagacggggtgatgatgacaataaaggggaggggcagcgGACTCGTcacatatatagatagatagatagatagatagatagatagtttatTCTGAAATCTAGTAAGATTACCTCCATGAAATCCTGCTCGACTCATGAGTTCCTCCCAGTTCAAGCCTGCTCCTAAGAGGGCATCCAGAGCTATCATTGGAGCATCATGACCACTTCGACCAGCCCAACCTGACAGACTGAACCTCTTGTAGGCCTCATCTCGTTCTGCTGGCCCATACTGGTCAGGCCAAATAACTGGCCCAGCCCCCAAAGATAGTCCTCTTAGATCCAAATAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU127269 lncRNA upstream 96406 6101162 ~ 6118513 (+) False G85971
TU127270 lncRNA upstream 96406 6101162 ~ 6118513 (+) True G85971
TU127264 lncRNA upstream 116585 6098128 ~ 6098334 (+) True G85967
TU127179 lncRNA upstream 256685 5957894 ~ 5958234 (+) True G85905
TU127011 lncRNA upstream 393232 5821431 ~ 5821687 (+) True G85774
XR_006252162.1 lncRNA downstream 113770 6330337 ~ 6336029 (+) True LOC122355060
TU127348 lncRNA downstream 307393 6523960 ~ 6524390 (+) True G86033
TU127354 lncRNA downstream 352656 6569223 ~ 6569454 (+) True G86037
TU127355 lncRNA downstream 353146 6569713 ~ 6569968 (+) True G86038
TU127360 lncRNA downstream 357347 6573914 ~ 6574126 (+) True G86043
XM_043253407.1 mRNA upstream 261433 5886952 ~ 5953486 (+) True becn1
XM_043253408.1 mRNA upstream 261433 5886952 ~ 5953486 (+) False becn1
XM_043253410.1 mRNA upstream 261433 5899838 ~ 5953486 (+) False becn1
XM_043253648.1 mRNA upstream 351629 5840203 ~ 5863290 (+) True med1
XM_043254393.1 mRNA upstream 400461 5780592 ~ 5814458 (+) False LOC122355829
XM_043253015.1 mRNA downstream 107926 6324493 ~ 6391831 (+) True LOC122355059
XM_043253421.1 mRNA downstream 365021 6581588 ~ 6583943 (+) True LOC122355310
XM_043253999.1 mRNA downstream 583218 6799785 ~ 6935072 (+) False plxdc1
XM_043253996.1 mRNA downstream 583219 6799786 ~ 6961984 (+) True plxdc1
XM_043253998.1 mRNA downstream 583219 6799786 ~ 6961983 (+) False plxdc1
TU127259 other upstream 118187 6095948 ~ 6096732 (+) True G85962
XR_006252205.1 other upstream 261607 5886952 ~ 5953312 (+) False becn1
XR_006252206.1 other upstream 271339 5886952 ~ 5943580 (+) False becn1
TU126784 other upstream 1125281 5088925 ~ 5089638 (+) True G85587
TU126761 other upstream 1761644 4452855 ~ 4453275 (+) True G85567
TU127334 other downstream 224254 6440821 ~ 6441526 (+) True G86019
TU127344 other downstream 305262 6521829 ~ 6522571 (+) True G86029
TU127497 other downstream 1086571 7303138 ~ 7304848 (+) False G86142
TU127500 other downstream 1091357 7307924 ~ 7308229 (+) True G86143
TU127672 other downstream 1599256 7815823 ~ 7844083 (+) False LOC122355675

Expression Profile