RNA id: TU127334


Basic Information

Item Value
RNA id TU127334
length 706
RNA type TUCP
GC content 0.44
exon number 1
gene id G86019
representative True

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 6440821 ~ 6441526 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

gttcatattgtagaacatttattcccaactaTGCCATTGAAGAGTCACCTTTGAGCGCTTTGGCTCACGGAAAAAGGTTGCAGCCACATGACAAACTGACCTGGActcctgaagcagagaaagcatttgaaaggttgaaaatgttgttacagacatccccaagtctgggacttccagaccctgagagaaatttgtacaaacagttgatgagaaaaatggtttcatgtcttctgttctgttacaggatCACGGGGGAAAGCTGAGACCGGtggcatatttttcaagtaaactcgaccctgtggcagcaggtctaccaaattgtctgagagctgtagcagcagcagaaaaagctattttagcttcaagggaaattgtgggatattctgatgtaacattactagtgccacacgctgtctctatgatcctgttggaacagaaaacatctcatttgtcaacagccagatggctcagatataataccattctattggaaatgccaaacatcacagtaaaacggtgtacagtattgaatcctgccacactgctcccgaccgagcaggatggcgaggaacataattgtatcgccgcattggaacaggtgtgcacaccgcgaccagatttaaaagaaaccccccttgacaatgcagatttggttttgtttgttgatggttCAGCGTCTCGAGACCCAGAAACCGGTAAAAACAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006252162.1 lncRNA upstream 104792 6330337 ~ 6336029 (+) True LOC122355060
TU127269 lncRNA upstream 322308 6101162 ~ 6118513 (+) False G85971
TU127270 lncRNA upstream 322308 6101162 ~ 6118513 (+) True G85971
TU127264 lncRNA upstream 342487 6098128 ~ 6098334 (+) True G85967
TU127179 lncRNA upstream 482587 5957894 ~ 5958234 (+) True G85905
TU127348 lncRNA downstream 82434 6523960 ~ 6524390 (+) True G86033
TU127354 lncRNA downstream 127697 6569223 ~ 6569454 (+) True G86037
TU127355 lncRNA downstream 128187 6569713 ~ 6569968 (+) True G86038
TU127360 lncRNA downstream 132388 6573914 ~ 6574126 (+) True G86043
TU127362 lncRNA downstream 227398 6668924 ~ 6669449 (+) True G86045
XM_043253015.1 mRNA upstream 48990 6324493 ~ 6391831 (+) True LOC122355059
XM_043253407.1 mRNA upstream 487335 5886952 ~ 5953486 (+) True becn1
XM_043253408.1 mRNA upstream 487335 5886952 ~ 5953486 (+) False becn1
XM_043253410.1 mRNA upstream 487335 5899838 ~ 5953486 (+) False becn1
XM_043253648.1 mRNA upstream 577531 5840203 ~ 5863290 (+) True med1
XM_043253421.1 mRNA downstream 140062 6581588 ~ 6583943 (+) True LOC122355310
XM_043253999.1 mRNA downstream 358259 6799785 ~ 6935072 (+) False plxdc1
XM_043253996.1 mRNA downstream 358260 6799786 ~ 6961984 (+) True plxdc1
XM_043253998.1 mRNA downstream 358260 6799786 ~ 6961983 (+) False plxdc1
XM_043253997.1 mRNA downstream 358260 6799786 ~ 6961982 (+) False plxdc1
TU127298 other upstream 224254 6214919 ~ 6216567 (+) True G85986
TU127259 other upstream 344089 6095948 ~ 6096732 (+) True G85962
XR_006252205.1 other upstream 487509 5886952 ~ 5953312 (+) False becn1
XR_006252206.1 other upstream 497241 5886952 ~ 5943580 (+) False becn1
TU126784 other upstream 1351183 5088925 ~ 5089638 (+) True G85587
TU127344 other downstream 80303 6521829 ~ 6522571 (+) True G86029
TU127497 other downstream 861612 7303138 ~ 7304848 (+) False G86142
TU127500 other downstream 866398 7307924 ~ 7308229 (+) True G86143
TU127672 other downstream 1374297 7815823 ~ 7844083 (+) False LOC122355675
unassigned_transcript_1921 other downstream 2263734 8705260 ~ 8705331 (+) True trnaq-cug_20

Expression Profile